Cow genome map
| Conread name: | Emb1-C0005195_B20 |
| Conread position: | 261-603 |
| Cow position: | chr11:10213870-10213535 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 274-595 |
| Cow position: | chr11:16251552-16251223 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 274-608 |
| Cow position: | chr11:1849462-1849137 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 274-608 |
| Cow position: | chr11:13061518-13061202 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 274-608 |
| Cow position: | chr11:35579956-35580294 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 274-608 |
| Cow position: | chr11:39499078-39499390 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 274-608 |
| Cow position: | chr11:42358826-42359148 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 274-608 |
| Cow position: | chr11:44031701-44032045 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 215 |
| Conread position: | 274-608 |
| Cow position: | chr11:44637059-44636720 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 105 |
| Conread position: | 274-608 |
| Cow position: | chr11:50153116-50152780 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 275-606 |
| Cow position: | chr11:27248195-27248522 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 275-608 |
| Cow position: | chr11:59702187-59702520 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 276-593 |
| Cow position: | chr11:62151178-62150872 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 281-603 |
| Cow position: | chr11:24601674-24601993 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 235 |
| Conread position: | 290-607 |
| Cow position: | chr11:52297506-52297188 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 250 |
| Conread position: | 293-606 |
| Cow position: | chr11:10620605-10620296 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 294-610 |
| Cow position: | chr11:45646869-45646558 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 296-606 |
| Cow position: | chr11:83323300-83323595 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 296-608 |
| Cow position: | chr11:8428218-8428545 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 117 |
| Conread position: | 297-608 |
| Cow position: | chr11:17036827-17036494 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 298-607 |
| Cow position: | chr11:30354793-30355091 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 300-607 |
| Cow position: | chr11:30912263-30911969 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 302-608 |
| Cow position: | chr11:24937393-24937699 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 303-606 |
| Cow position: | chr11:55052604-55052903 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 19, 176 |
| Conread position: | 307-608 |
| Cow position: | chr11:34120929-34121232 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 311-610 |
| Cow position: | chr11:2917837-2917550 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 311-610 |
| Cow position: | chr11:81162691-81162397 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 315-608 |
| Cow position: | chr11:16342497-16342195 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 320-608 |
| Cow position: | chr11:20238421-20238710 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 320-608 |
| Cow position: | chr11:77319172-77319448 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 326-608 |
| Cow position: | chr11:62239504-62239778 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 337-609 |
| Cow position: | chr11:65762830-65762556 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 61 |
| Conread position: | 342-608 |
| Cow position: | chr11:18591662-18591400 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 36 |
| Conread position: | 344-594 |
| Cow position: | chr11:29960078-29960318 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 190, 43 |
| Conread position: | 347-608 |
| Cow position: | chr11:67550587-67550344 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 349-608 |
| Cow position: | chr11:2925512-2925262 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 372-609 |
| Cow position: | chr11:15338876-15339098 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 149, 35 |
| Conread position: | 384-608 |
| Cow position: | chr11:34646402-34646623 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 390-608 |
| Cow position: | chr11:30954815-30955034 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 393-608 |
| Cow position: | chr11:5286-5497 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 398-608 |
| Cow position: | chr11:30830791-30830580 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 123, 154 |
| Conread position: | 406-592 |
| Cow position: | chr11:80556053-80556240 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 110, 143 |
| Conread position: | 414-608 |
| Cow position: | chr11:2576063-2575870 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 137 |
| Conread position: | 433-593 |
| Cow position: | chr11:33825031-33824869 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 121 |
| Conread position: | 434-606 |
| Cow position: | chr11:47772531-47772358 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 434-608 |
| Cow position: | chr11:69977838-69978004 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 447-610 |
| Cow position: | chr11:80537360-80537524 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 469-606 |
| Cow position: | chr11:39060705-39060570 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 492-608 |
| Cow position: | chr11:54218635-54218748 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.