Cow genome map
| Conread name: | Emb1-C0005195_B20 |
| Conread position: | 261-608 |
| Cow position: | chr6:8209841-8209514 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 263-604 |
| Cow position: | chr6:15305335-15305658 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 274-603 |
| Cow position: | chr6:13688051-13687726 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 120 |
| Conread position: | 274-606 |
| Cow position: | chr6:31535812-31535480 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 274-608 |
| Cow position: | chr6:26728766-26728441 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 274-608 |
| Cow position: | chr6:32121671-32121998 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 274-608 |
| Cow position: | chr6:32287380-32287730 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 274-608 |
| Cow position: | chr6:65870784-65871128 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 275-608 |
| Cow position: | chr6:20098203-20097868 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 277-608 |
| Cow position: | chr6:13040215-13040531 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 191 |
| Conread position: | 283-608 |
| Cow position: | chr6:52478658-52478320 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 286-588 |
| Cow position: | chr6:49410910-49410626 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 287-603 |
| Cow position: | chr6:29484865-29485169 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 290-594 |
| Cow position: | chr6:51581483-51581175 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 292-608 |
| Cow position: | chr6:4383271-4383570 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 292-608 |
| Cow position: | chr6:38207717-38207399 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 293-606 |
| Cow position: | chr6:53460792-53460478 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 293-608 |
| Cow position: | chr6:10106217-10105888 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 273 |
| Conread position: | 293-608 |
| Cow position: | chr6:28977252-28976949 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 293-608 |
| Cow position: | chr6:44194766-44194458 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 295-608 |
| Cow position: | chr6:24468611-24468305 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 312-606 |
| Cow position: | chr6:21231335-21231613 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 320-606 |
| Cow position: | chr6:21456883-21456594 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 325-608 |
| Cow position: | chr6:47574717-47574997 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 345-608 |
| Cow position: | chr6:47640604-47640341 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 176, 207 |
| Conread position: | 349-608 |
| Cow position: | chr6:15243088-15243346 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 357-608 |
| Cow position: | chr6:19264655-19264408 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 357-608 |
| Cow position: | chr6:61608352-61608603 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 195 |
| Conread position: | 364-608 |
| Cow position: | chr6:46283146-46282913 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 166, 34 |
| Conread position: | 384-608 |
| Cow position: | chr6:12829354-12829134 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 390-593 |
| Cow position: | chr6:37376643-37376438 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 130, 168 |
| Conread position: | 394-608 |
| Cow position: | chr6:50975936-50976139 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 399-606 |
| Cow position: | chr6:11192583-11192375 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 48 |
| Conread position: | 400-607 |
| Cow position: | chr6:58597620-58597416 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 85 |
| Conread position: | 406-610 |
| Cow position: | chr6:59603317-59603115 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 137, 46 |
| Conread position: | 420-592 |
| Cow position: | chr6:66375426-66375258 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 437-593 |
| Cow position: | chr6:23466108-23465957 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 451-608 |
| Cow position: | chr6:67615496-67615339 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 101 |
| Conread position: | 452-594 |
| Cow position: | chr6:60468173-60468315 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 100 |
Show alignments to all cow chromosomes.