Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 1-661
Cow position: chr11:67845726-67845038 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 111

Conread position: 3-259
Cow position: chr11:50042288-50042029 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 13, 77

Conread position: 3-328
Cow position: chr11:4269555-4269203 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 34, 0

Conread position: 3-328
Cow position: chr11:28053768-28053444 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 85

Conread position: 3-356
Cow position: chr11:21898996-21898626 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 106

Conread position: 3-380
Cow position: chr11:44252644-44253053 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 276
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 326

Conread position: 3-410
Cow position: chr11:30278440-30278869 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 272
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 30, 77

Conread position: 3-524
Cow position: chr11:11988979-11989528 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 373

Conread position: 3-584
Cow position: chr11:52420249-52420846 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 382
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 23, 110

Conread position: 3-654
Cow position: chr11:28391816-28392493 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 3-660
Cow position: chr11:44582488-44581810 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 3-661
Cow position: chr11:3493835-3494523 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 122

Conread position: 3-661
Cow position: chr11:9733831-9733149 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 109

Conread position: 3-661
Cow position: chr11:10848297-10848971 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 361

Conread position: 3-661
Cow position: chr11:17547009-17547690 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-661
Cow position: chr11:19063225-19062543 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 23

Conread position: 3-661
Cow position: chr11:23880876-23881556 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr11:24394160-24394845 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr11:26124080-26123389 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr11:26548372-26549059 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 3-661
Cow position: chr11:29667759-29667061 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 530

Conread position: 3-661
Cow position: chr11:30253082-30253757 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr11:32452674-32453365 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 123

Conread position: 3-661
Cow position: chr11:43513784-43513096 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 510

Conread position: 3-661
Cow position: chr11:44518018-44517332 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 3-661
Cow position: chr11:53286320-53285643 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 7

Conread position: 3-661
Cow position: chr11:53431203-53430499 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 374

Conread position: 3-661
Cow position: chr11:61400231-61399571 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr11:66729942-66730613 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 102

Conread position: 3-661
Cow position: chr11:67451341-67452026 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 3-661
Cow position: chr11:72310187-72309506 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr11:85392979-85392300 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 124

Conread position: 3-662
Cow position: chr11:40775150-40774493 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 4-661
Cow position: chr11:9224698-9224051 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 76

Conread position: 4-661
Cow position: chr11:28228918-28228235 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 190

Conread position: 4-661
Cow position: chr11:39804586-39805268 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 99

Conread position: 5-260
Cow position: chr11:24336357-24336099 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 142

Conread position: 5-413
Cow position: chr11:45921760-45921323 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 289
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 119

Conread position: 5-659
Cow position: chr11:3856070-3856741 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 356

Conread position: 5-662
Cow position: chr11:18887701-18888350 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 104

Conread position: 11-661
Cow position: chr11:87142436-87143115 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 97

Conread position: 17-649
Cow position: chr11:30122982-30122342 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 17-662
Cow position: chr11:67154549-67155211 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 253

Conread position: 18-612
Cow position: chr11:58135258-58135871 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 94

Conread position: 18-655
Cow position: chr11:4026748-4026084 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 18-661
Cow position: chr11:12357552-12356868 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 200

Conread position: 18-662
Cow position: chr11:38834573-38833917 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 118

Conread position: 18-662
Cow position: chr11:42311579-42310907 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 187

Conread position: 20-261
Cow position: chr11:74424459-74424717 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 21-524
Cow position: chr11:26074103-26073571 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 83

Conread position: 21-661
Cow position: chr11:26070184-26069512 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 82

Conread position: 23-661
Cow position: chr11:2727605-2728252 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 86

Conread position: 26-661
Cow position: chr11:19101617-19100958 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 86

Conread position: 27-328
Cow position: chr11:21928312-21928000 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 60, 111

Conread position: 33-374
Cow position: chr11:54216379-54216018 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 53, 328

Conread position: 52-661
Cow position: chr11:18838492-18837944 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 56

Conread position: 82-661
Cow position: chr11:27657381-27657970 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 20

Conread position: 82-662
Cow position: chr11:28740366-28739775 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 111

Conread position: 95-662
Cow position: chr11:46779899-46779328 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 200

Conread position: 114-275
Cow position: chr11:44489637-44489472 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 117-661
Cow position: chr11:10056484-10057033 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 89

Conread position: 119-661
Cow position: chr11:60033237-60032704 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 342
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 111

Conread position: 121-661
Cow position: chr11:23249488-23248936 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 130-616
Cow position: chr11:27669001-27668508 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 46

Conread position: 134-661
Cow position: chr11:30208129-30208671 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 85

Conread position: 140-300
Cow position: chr11:21889993-21889838 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 89

Conread position: 159-596
Cow position: chr11:21475143-21475587 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 298
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 55, 176

Conread position: 161-661
Cow position: chr11:47738519-47738014 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 306
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 275

Conread position: 164-366
Cow position: chr11:81341243-81341041 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 59

Conread position: 196-661
Cow position: chr11:50836613-50836134 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 341

Conread position: 203-604
Cow position: chr11:82147699-82147318 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 271
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 96, 152

Conread position: 203-661
Cow position: chr11:3104385-3103914 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 301
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 139

Conread position: 256-612
Cow position: chr11:13048645-13048285 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 248

Conread position: 279-661
Cow position: chr11:4055183-4054802 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 244
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 91, 194

Conread position: 296-662
Cow position: chr11:15986418-15986777 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 8

Conread position: 300-661
Cow position: chr11:11590137-11590500 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 66, 50

Conread position: 303-661
Cow position: chr11:86876711-86876350 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 239
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 48, 223

Conread position: 304-661
Cow position: chr11:32079614-32079254 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 65, 231

Conread position: 326-661
Cow position: chr11:34018204-34018537 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 8

Conread position: 348-615
Cow position: chr11:4268958-4268692 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 176

Conread position: 355-661
Cow position: chr11:63647287-63647595 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 21

Conread position: 357-660
Cow position: chr11:6015135-6015453 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 81, 19

Conread position: 370-661
Cow position: chr11:44155757-44155467 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 103, 80

Conread position: 403-526
Cow position: chr11:63976967-63977091 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 403-661
Cow position: chr11:40405777-40405520 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 72, 129

Conread position: 403-661
Cow position: chr11:44041983-44042241 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 120

Conread position: 404-616
Cow position: chr11:10957092-10957302 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 119

Conread position: 415-655
Cow position: chr11:12318739-12318499 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 108

Conread position: 415-661
Cow position: chr11:47728404-47728158 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 116

Conread position: 434-661
Cow position: chr11:32479512-32479287 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 88

Conread position: 459-661
Cow position: chr11:41100311-41100513 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 72

Show alignments to all cow chromosomes.