Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 3-241 |
| Cow position: | chr12:11580947-11581193 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 3-387 |
| Cow position: | chr12:25099939-25099523 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 34, 161 |
| Conread position: | 3-661 |
| Cow position: | chr12:3362073-3362753 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 3-661 |
| Cow position: | chr12:6405508-6404818 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 3-661 |
| Cow position: | chr12:8676962-8676269 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 443 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 3-661 |
| Cow position: | chr12:27931770-27931087 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 226 |
| Conread position: | 3-661 |
| Cow position: | chr12:32654680-32655371 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 3-661 |
| Cow position: | chr12:35345683-35346345 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 3-661 |
| Cow position: | chr12:37560142-37560824 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 437 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 554 |
| Conread position: | 3-661 |
| Cow position: | chr12:42607132-42606430 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr12:42858403-42857714 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 382 |
| Conread position: | 3-661 |
| Cow position: | chr12:48471744-48471077 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 3-662 |
| Cow position: | chr12:11099356-11100056 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 224 |
| Conread position: | 4-661 |
| Cow position: | chr12:27854829-27854144 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 547 |
| Conread position: | 5-385 |
| Cow position: | chr12:3209089-3209479 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 214 |
| Conread position: | 5-636 |
| Cow position: | chr12:5144823-5145451 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 6-661 |
| Cow position: | chr12:23161792-23161092 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 446 |
| Conread position: | 6-661 |
| Cow position: | chr12:25262329-25261699 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 389 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 33-661 |
| Cow position: | chr12:14661183-14660532 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 62-661 |
| Cow position: | chr12:21429203-21429829 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 82-661 |
| Cow position: | chr12:21209885-21210485 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 82-661 |
| Cow position: | chr12:22204492-22203891 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 154-659 |
| Cow position: | chr12:24994663-24994144 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 383 |
| Conread position: | 175-661 |
| Cow position: | chr12:29445070-29445544 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 235-661 |
| Cow position: | chr12:22568373-22567937 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 268-662 |
| Cow position: | chr12:35634088-35633703 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 285-661 |
| Cow position: | chr12:21253144-21252765 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 240 |
| Conread position: | 288-661 |
| Cow position: | chr12:30685189-30685552 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 291-661 |
| Cow position: | chr12:25099019-25098658 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 187, 21 |
| Conread position: | 296-661 |
| Cow position: | chr12:34174796-34175164 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 305-661 |
| Cow position: | chr12:20461768-20461412 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 312-662 |
| Cow position: | chr12:21224972-21224635 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 153, 18 |
| Conread position: | 323-657 |
| Cow position: | chr12:466785-466448 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 152, 12 |
| Conread position: | 370-587 |
| Cow position: | chr12:39038936-39038723 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 372-661 |
| Cow position: | chr12:22519448-22519160 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 106, 151 |
| Conread position: | 402-661 |
| Cow position: | chr12:21428031-21427772 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 76, 121 |
| Conread position: | 412-645 |
| Cow position: | chr12:33120980-33121222 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 157 |
Show alignments to all cow chromosomes.