Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 3-253 |
| Cow position: | chr14:39722162-39721914 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 3-390 |
| Cow position: | chr14:40341847-40342262 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 3-476 |
| Cow position: | chr14:33402481-33402971 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 324 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 30, 249 |
| Conread position: | 3-659 |
| Cow position: | chr14:16918928-16918252 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 355 |
| Conread position: | 3-660 |
| Cow position: | chr14:13863306-13862627 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 404 |
| Conread position: | 3-660 |
| Cow position: | chr14:20783245-20783942 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 385 |
| Conread position: | 3-661 |
| Cow position: | chr14:751355-752041 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 3-661 |
| Cow position: | chr14:1659245-1659931 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 3-661 |
| Cow position: | chr14:13303749-13304432 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 208 |
| Conread position: | 3-661 |
| Cow position: | chr14:17000268-16999575 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-661 |
| Cow position: | chr14:17760090-17759423 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 3-661 |
| Cow position: | chr14:22030655-22029976 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 368 |
| Conread position: | 3-661 |
| Cow position: | chr14:27978150-27978832 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 214 |
| Conread position: | 3-661 |
| Cow position: | chr14:30661270-30660594 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 3-661 |
| Cow position: | chr14:37224981-37225632 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 3-661 |
| Cow position: | chr14:44552642-44553304 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 3-661 |
| Cow position: | chr14:45671257-45670555 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-662 |
| Cow position: | chr14:11153362-11152676 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 372 |
| Conread position: | 3-662 |
| Cow position: | chr14:48253524-48252850 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 251 |
| Conread position: | 4-306 |
| Cow position: | chr14:34861258-34861560 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 4-615 |
| Cow position: | chr14:33677860-33678490 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 4-660 |
| Cow position: | chr14:45028201-45027527 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 4-661 |
| Cow position: | chr14:2295080-2295744 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 4-661 |
| Cow position: | chr14:19327471-19326786 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 4-662 |
| Cow position: | chr14:45710933-45710261 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 5-299 |
| Cow position: | chr14:40168940-40168634 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 5-395 |
| Cow position: | chr14:44689862-44690275 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 5-616 |
| Cow position: | chr14:38147797-38148418 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 5-654 |
| Cow position: | chr14:44775246-44774604 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 5-661 |
| Cow position: | chr14:5513729-5514400 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 5-662 |
| Cow position: | chr14:5074745-5075413 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 6-615 |
| Cow position: | chr14:15275057-15274413 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 381 |
| Conread position: | 7-320 |
| Cow position: | chr14:2951766-2951442 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 209 |
| Conread position: | 7-661 |
| Cow position: | chr14:5529855-5530534 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 16-662 |
| Cow position: | chr14:46402794-46403430 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 416 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 17-327 |
| Cow position: | chr14:45081858-45082189 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 17-646 |
| Cow position: | chr14:21744904-21745538 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 17-657 |
| Cow position: | chr14:48601531-48600881 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 104 |
| Conread position: | 18-446 |
| Cow position: | chr14:13274414-13274867 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 16, 182 |
| Conread position: | 18-606 |
| Cow position: | chr14:9514482-9513914 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 396 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 18-615 |
| Cow position: | chr14:17687309-17687924 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 18-661 |
| Cow position: | chr14:13779753-13780426 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 19-228 |
| Cow position: | chr14:12899902-12900128 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 21-661 |
| Cow position: | chr14:7473160-7473825 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 33-428 |
| Cow position: | chr14:13579216-13579626 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 89 |
| Conread position: | 33-661 |
| Cow position: | chr14:190867-191526 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 213 |
| Conread position: | 33-661 |
| Cow position: | chr14:45086064-45086693 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 414 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 88 |
| Conread position: | 82-645 |
| Cow position: | chr14:25365609-25365066 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 82-661 |
| Cow position: | chr14:32447841-32448430 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 114-661 |
| Cow position: | chr14:11654939-11654402 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 117-661 |
| Cow position: | chr14:18417427-18417979 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 121-661 |
| Cow position: | chr14:30595430-30594878 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 358 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 91, 22 |
| Conread position: | 124-660 |
| Cow position: | chr14:12742117-12741571 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 128-662 |
| Cow position: | chr14:17490404-17489863 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 172, 326 |
| Conread position: | 154-661 |
| Cow position: | chr14:37412140-37411643 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 156-661 |
| Cow position: | chr14:2287224-2287741 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 243 |
| Conread position: | 189-659 |
| Cow position: | chr14:16342901-16342427 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 73 |
| Conread position: | 206-603 |
| Cow position: | chr14:35930607-35931002 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 232-656 |
| Cow position: | chr14:9102566-9102998 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 256-660 |
| Cow position: | chr14:11476225-11475815 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 304-661 |
| Cow position: | chr14:33392805-33392448 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 174, 72 |
| Conread position: | 313-662 |
| Cow position: | chr14:46547035-46547377 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 371-659 |
| Cow position: | chr14:47656572-47656856 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 103, 126 |
| Conread position: | 373-660 |
| Cow position: | chr14:33490026-33490312 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 374-662 |
| Cow position: | chr14:30704974-30704670 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 251 |
| Conread position: | 385-612 |
| Cow position: | chr14:30583200-30582975 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 387-661 |
| Cow position: | chr14:20911119-20911388 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 55 |
| Conread position: | 410-661 |
| Cow position: | chr14:50112584-50112835 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 113 |
| Conread position: | 429-661 |
| Cow position: | chr14:13321800-13321573 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 39 |
Show alignments to all cow chromosomes.