Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 2-522
Cow position: chr15:13677312-13677821 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 359
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 31, 120

Conread position: 3-240
Cow position: chr15:11597216-11596972 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 101

Conread position: 3-297
Cow position: chr15:31860427-31860107 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 32, 72

Conread position: 3-485
Cow position: chr15:6079544-6080043 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 101

Conread position: 3-598
Cow position: chr15:24295877-24296496 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 3-600
Cow position: chr15:4197254-4197878 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-607
Cow position: chr15:4922937-4923563 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 52

Conread position: 3-649
Cow position: chr15:4823259-4823894 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 137

Conread position: 3-652
Cow position: chr15:9912438-9911771 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 108

Conread position: 3-655
Cow position: chr15:6383381-6382698 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 109

Conread position: 3-659
Cow position: chr15:2926100-2926763 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 3-661
Cow position: chr15:2077450-2078123 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr15:2646863-2646179 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr15:3260528-3259847 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 3-661
Cow position: chr15:4386547-4387231 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 3-661
Cow position: chr15:14581571-14580886 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 108

Conread position: 3-661
Cow position: chr15:17293840-17294523 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 446
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 43

Conread position: 3-661
Cow position: chr15:18332036-18331363 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 156

Conread position: 3-661
Cow position: chr15:18577504-18578187 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr15:19737263-19736581 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr15:21664951-21664268 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 3-661
Cow position: chr15:32493083-32492408 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 240

Conread position: 3-661
Cow position: chr15:35752527-35751831 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 536

Conread position: 3-661
Cow position: chr15:50123142-50122464 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-662
Cow position: chr15:5981141-5981833 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 4-640
Cow position: chr15:21450475-21451148 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 69

Conread position: 4-661
Cow position: chr15:11626479-11627144 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 86

Conread position: 4-662
Cow position: chr15:580223-580904 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 226

Conread position: 5-352
Cow position: chr15:6067384-6067025 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 62

Conread position: 5-421
Cow position: chr15:12454026-12454470 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 307
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 214

Conread position: 5-604
Cow position: chr15:4915984-4916588 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 407
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 74, 104

Conread position: 5-661
Cow position: chr15:7838055-7838743 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 550

Conread position: 5-662
Cow position: chr15:3182273-3181590 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 51

Conread position: 11-165
Cow position: chr15:2214096-2213931 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 101

Conread position: 13-609
Cow position: chr15:17217324-17216733 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 37

Conread position: 15-344
Cow position: chr15:50056833-50057186 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 241
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 110

Conread position: 16-525
Cow position: chr15:4679063-4679617 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 368
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 21, 59

Conread position: 16-555
Cow position: chr15:7550947-7551508 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 383
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 95

Conread position: 17-661
Cow position: chr15:58463-59126 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 353

Conread position: 17-662
Cow position: chr15:8100274-8100926 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 18-649
Cow position: chr15:4962442-4963076 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 151

Conread position: 18-661
Cow position: chr15:11293628-11292965 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 103

Conread position: 18-661
Cow position: chr15:15346306-15345633 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 533

Conread position: 18-661
Cow position: chr15:24794630-24795291 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 340

Conread position: 18-661
Cow position: chr15:31359678-31360336 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 243

Conread position: 19-445
Cow position: chr15:6485388-6485837 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 303
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 19, 211

Conread position: 19-661
Cow position: chr15:1765111-1765789 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 293

Conread position: 20-360
Cow position: chr15:6367993-6367617 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 20-662
Cow position: chr15:4813409-4814065 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 92

Conread position: 32-661
Cow position: chr15:7965137-7964469 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 363

Conread position: 33-616
Cow position: chr15:25654249-25653633 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 76

Conread position: 33-661
Cow position: chr15:2901441-2900786 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 350

Conread position: 33-661
Cow position: chr15:9430764-9431409 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 417
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 14

Conread position: 35-649
Cow position: chr15:4766010-4766654 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 161

Conread position: 35-661
Cow position: chr15:329155-329803 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 411
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 72

Conread position: 50-661
Cow position: chr15:41659018-41659642 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 486

Conread position: 82-661
Cow position: chr15:2588573-2587973 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 82-661
Cow position: chr15:20411475-20412070 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 82-662
Cow position: chr15:7563872-7564473 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 85-661
Cow position: chr15:17036784-17036185 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 17

Conread position: 85-662
Cow position: chr15:9003323-9002747 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 65

Conread position: 119-662
Cow position: chr15:8058889-8059442 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 247

Conread position: 121-615
Cow position: chr15:51218643-51219150 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 251

Conread position: 130-661
Cow position: chr15:4726137-4726677 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 115

Conread position: 130-661
Cow position: chr15:6479328-6479854 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 12

Conread position: 136-661
Cow position: chr15:32067670-32067135 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 31

Conread position: 136-661
Cow position: chr15:36668662-36669170 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 53

Conread position: 143-661
Cow position: chr15:6591170-6590642 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 5

Conread position: 148-662
Cow position: chr15:26156788-26157307 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 64

Conread position: 157-661
Cow position: chr15:24288511-24287989 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 36

Conread position: 157-661
Cow position: chr15:33122334-33122854 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 380

Conread position: 188-661
Cow position: chr15:51613111-51613611 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 10

Conread position: 189-607
Cow position: chr15:17077574-17077146 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 281
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 347

Conread position: 190-661
Cow position: chr15:10478533-10478055 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 319
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 72, 9

Conread position: 196-661
Cow position: chr15:106996-107475 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 341

Conread position: 196-661
Cow position: chr15:35898781-35898300 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 341

Conread position: 214-661
Cow position: chr15:6561601-6562061 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 322

Conread position: 219-662
Cow position: chr15:25205984-25205531 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 14

Conread position: 240-607
Cow position: chr15:1833598-1833221 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 223

Conread position: 267-613
Cow position: chr15:6613793-6614145 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 238

Conread position: 282-662
Cow position: chr15:50869425-50869809 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 248
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 19, 249

Conread position: 283-661
Cow position: chr15:13390228-13389850 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 239

Conread position: 291-659
Cow position: chr15:33494761-33495122 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 235
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 184, 18

Conread position: 297-615
Cow position: chr15:8698819-8698511 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 44

Conread position: 362-660
Cow position: chr15:6552606-6552307 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 196
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 116, 161

Conread position: 370-661
Cow position: chr15:17122052-17122348 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 107, 0

Conread position: 385-658
Cow position: chr15:31859758-31859485 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 147

Conread position: 403-661
Cow position: chr15:1783547-1783805 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 74, 120

Conread position: 403-661
Cow position: chr15:2018335-2018591 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 12, 25

Conread position: 403-661
Cow position: chr15:4081019-4080761 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 75, 120

Show alignments to all cow chromosomes.