Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 3-298 |
| Cow position: | chr16:11284040-11284356 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 3-299 |
| Cow position: | chr16:19638509-19638816 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 3-328 |
| Cow position: | chr16:31591468-31591123 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 3-332 |
| Cow position: | chr16:25189096-25189440 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 3-390 |
| Cow position: | chr16:17056522-17056114 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 3-424 |
| Cow position: | chr16:41166198-41165775 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 3-471 |
| Cow position: | chr16:28437028-28436520 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 3-525 |
| Cow position: | chr16:39824383-39824918 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 158 |
| Conread position: | 3-597 |
| Cow position: | chr16:47474705-47475308 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 3-598 |
| Cow position: | chr16:28196797-28196174 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 550 |
| Conread position: | 3-646 |
| Cow position: | chr16:26978588-26979220 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 3-659 |
| Cow position: | chr16:25442079-25442759 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr16:1567004-1566332 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 3-661 |
| Cow position: | chr16:2482688-2482019 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 3-661 |
| Cow position: | chr16:8815656-8814976 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 352 |
| Conread position: | 3-661 |
| Cow position: | chr16:10438700-10439388 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 266 |
| Conread position: | 3-661 |
| Cow position: | chr16:14665361-14664684 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 536 |
| Conread position: | 3-661 |
| Cow position: | chr16:15567704-15568388 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 132 |
| Conread position: | 3-661 |
| Cow position: | chr16:19779202-19778520 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 3-661 |
| Cow position: | chr16:23535442-23534767 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr16:23983744-23984434 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 123 |
| Conread position: | 3-661 |
| Cow position: | chr16:25457026-25456349 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 3-661 |
| Cow position: | chr16:26664201-26664858 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 319 |
| Conread position: | 3-661 |
| Cow position: | chr16:27593955-27594639 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 3-661 |
| Cow position: | chr16:29047471-29048154 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 3-661 |
| Cow position: | chr16:40295726-40295035 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 310 |
| Conread position: | 3-661 |
| Cow position: | chr16:43896826-43896132 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 382 |
| Conread position: | 3-661 |
| Cow position: | chr16:54324887-54324197 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 4-300 |
| Cow position: | chr16:4478521-4478209 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 215 |
| Conread position: | 4-525 |
| Cow position: | chr16:16270686-16270138 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 5-476 |
| Cow position: | chr16:10565321-10564836 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 5-614 |
| Cow position: | chr16:41762288-41762899 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 13-326 |
| Cow position: | chr16:3828814-3828495 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 16-328 |
| Cow position: | chr16:15477303-15477636 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 16-661 |
| Cow position: | chr16:27732918-27732249 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 17-546 |
| Cow position: | chr16:10568124-10568645 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 358 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 17-661 |
| Cow position: | chr16:3088743-3088072 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 533 |
| Conread position: | 17-662 |
| Cow position: | chr16:3330400-3331062 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 18-551 |
| Cow position: | chr16:48334107-48333574 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 18-661 |
| Cow position: | chr16:837780-838444 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 356 |
| Conread position: | 18-661 |
| Cow position: | chr16:1432654-1433316 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 18-661 |
| Cow position: | chr16:7675995-7675326 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 342 |
| Conread position: | 18-661 |
| Cow position: | chr16:15185535-15186205 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 538 |
| Conread position: | 18-661 |
| Cow position: | chr16:34530766-34531419 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 150 |
| Conread position: | 19-434 |
| Cow position: | chr16:406576-406132 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 357 |
| Conread position: | 19-516 |
| Cow position: | chr16:25171811-25172338 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 24-655 |
| Cow position: | chr16:2238282-2237646 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 33-358 |
| Cow position: | chr16:51038557-51038896 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 74, 169 |
| Conread position: | 33-661 |
| Cow position: | chr16:25258306-25258934 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 238 |
| Conread position: | 33-661 |
| Cow position: | chr16:28470593-28469930 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 341 |
| Conread position: | 34-612 |
| Cow position: | chr16:5485213-5485804 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 503 |
| Conread position: | 34-659 |
| Cow position: | chr16:25086099-25086741 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 38-660 |
| Cow position: | chr16:12537454-12536821 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 82-660 |
| Cow position: | chr16:51403355-51402745 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 407 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 82-661 |
| Cow position: | chr16:33065-33663 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 84-366 |
| Cow position: | chr16:39366370-39366085 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 84-524 |
| Cow position: | chr16:9931282-9931729 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 87-661 |
| Cow position: | chr16:16228862-16229438 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 390 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 102-661 |
| Cow position: | chr16:2726655-2726083 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 139 |
| Conread position: | 114-526 |
| Cow position: | chr16:4367660-4368084 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 231 |
| Conread position: | 115-656 |
| Cow position: | chr16:41571960-41572526 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 115-662 |
| Cow position: | chr16:1960043-1959493 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 122-662 |
| Cow position: | chr16:41754031-41753480 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 139-661 |
| Cow position: | chr16:5527789-5527255 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 397 |
| Conread position: | 163-662 |
| Cow position: | chr16:49385652-49386159 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 339 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 194-661 |
| Cow position: | chr16:49233828-49233361 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 64, 142 |
| Conread position: | 296-661 |
| Cow position: | chr16:28169556-28169190 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 303-661 |
| Cow position: | chr16:5119248-5118887 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 223 |
| Conread position: | 370-661 |
| Cow position: | chr16:3828499-3828207 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 148 |
| Conread position: | 370-661 |
| Cow position: | chr16:20193331-20193040 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 108, 153 |
| Conread position: | 378-661 |
| Cow position: | chr16:7465453-7465737 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 134 |
| Conread position: | 409-616 |
| Cow position: | chr16:17949372-17949166 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 524-661 |
| Cow position: | chr16:20200118-20200258 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.