Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 3-356 |
| Cow position: | chr17:33284814-33284448 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 3-588 |
| Cow position: | chr17:6069573-6070174 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-588 |
| Cow position: | chr17:14240519-14241135 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 3-590 |
| Cow position: | chr17:3655274-3654656 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-612 |
| Cow position: | chr17:4083042-4083668 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 3-616 |
| Cow position: | chr17:9080402-9079762 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 3-649 |
| Cow position: | chr17:5227647-5228316 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 3-661 |
| Cow position: | chr17:182595-183277 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 3-661 |
| Cow position: | chr17:2247067-2246380 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 3-661 |
| Cow position: | chr17:4061117-4061816 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 359 |
| Conread position: | 3-661 |
| Cow position: | chr17:11783873-11784573 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr17:14216008-14215342 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr17:15142336-15141651 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr17:15436801-15437490 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr17:15851708-15852399 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 553 |
| Conread position: | 3-661 |
| Cow position: | chr17:19267807-19267139 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 219 |
| Conread position: | 3-661 |
| Cow position: | chr17:20099448-20098779 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr17:23323433-23322742 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr17:24783180-24783868 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 3-661 |
| Cow position: | chr17:27793759-27793077 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 378 |
| Conread position: | 3-661 |
| Cow position: | chr17:39049233-39049923 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 3-661 |
| Cow position: | chr17:40805830-40806513 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr17:43989521-43990208 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 368 |
| Conread position: | 3-662 |
| Cow position: | chr17:20086745-20086069 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 4-525 |
| Cow position: | chr17:150864-150339 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 345 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 189 |
| Conread position: | 4-661 |
| Cow position: | chr17:8202975-8203640 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 4-661 |
| Cow position: | chr17:20080851-20080190 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 4-661 |
| Cow position: | chr17:24028982-24028299 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 370 |
| Conread position: | 5-187 |
| Cow position: | chr17:4783833-4783641 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 5-300 |
| Cow position: | chr17:4941695-4941394 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 5-661 |
| Cow position: | chr17:3707756-3707096 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 10-661 |
| Cow position: | chr17:2169467-2170127 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 16-525 |
| Cow position: | chr17:1656815-1656310 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 16-655 |
| Cow position: | chr17:16121521-16120906 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 424 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 16-661 |
| Cow position: | chr17:20403464-20404122 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 17-422 |
| Cow position: | chr17:22559003-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 17-661 |
| Cow position: | chr17:11086693-11086021 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 18-487 |
| Cow position: | chr17:2580659-2581154 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 18-661 |
| Cow position: | chr17:6260895-6261565 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 366 |
| Conread position: | 24-438 |
| Cow position: | chr17:2031165-2031595 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 43-624 |
| Cow position: | chr17:4675185-4675780 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 50-662 |
| Cow position: | chr17:6000409-5999792 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 84-661 |
| Cow position: | chr17:14936861-14936268 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 91-661 |
| Cow position: | chr17:3640783-3640199 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 113-661 |
| Cow position: | chr17:2263286-2263845 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 421 |
| Conread position: | 114-661 |
| Cow position: | chr17:28027361-28026801 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 425 |
| Conread position: | 139-616 |
| Cow position: | chr17:733174-732683 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 164-662 |
| Cow position: | chr17:20489519-20490011 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 108 |
| Conread position: | 206-661 |
| Cow position: | chr17:4783572-4783106 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 214-661 |
| Cow position: | chr17:13967173-13967632 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 239 |
| Conread position: | 220-661 |
| Cow position: | chr17:29302009-29302463 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 315 |
| Conread position: | 279-587 |
| Cow position: | chr17:42266983-42267286 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 297-662 |
| Cow position: | chr17:9751051-9751413 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 307-661 |
| Cow position: | chr17:135979-136334 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 314-661 |
| Cow position: | chr17:6121141-6121492 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 211 |
| Conread position: | 370-661 |
| Cow position: | chr17:39855-40146 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 108, 153 |
| Conread position: | 370-661 |
| Cow position: | chr17:2554860-2554569 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 153 |
| Conread position: | 370-661 |
| Cow position: | chr17:17257275-17256984 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 108, 153 |
| Conread position: | 375-661 |
| Cow position: | chr17:20415040-20414754 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 148 |
| Conread position: | 385-612 |
| Cow position: | chr17:4346149-4345924 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 93, 147 |
| Conread position: | 402-661 |
| Cow position: | chr17:19366705-19366980 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 403-661 |
| Cow position: | chr17:19980688-19980433 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 415-661 |
| Cow position: | chr17:22561357-22561594 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 426-661 |
| Cow position: | chr17:45271648-45271413 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 503-661 |
| Cow position: | chr17:44865557-44865722 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.