Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 2-661 |
| Cow position: | chr18:46867672-46867003 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 3-328 |
| Cow position: | chr18:40479623-40479970 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-390 |
| Cow position: | chr18:52652139-52652555 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 34, 375 |
| Conread position: | 3-595 |
| Cow position: | chr18:28972655-28972040 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 3-620 |
| Cow position: | chr18:51461823-51461179 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 368 |
| Conread position: | 3-661 |
| Cow position: | chr18:14131623-14132304 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 368 |
| Conread position: | 3-661 |
| Cow position: | chr18:14417209-14417883 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 196 |
| Conread position: | 3-661 |
| Cow position: | chr18:16175386-16174707 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr18:16392852-16392191 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 3-661 |
| Cow position: | chr18:19353590-19354281 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 372 |
| Conread position: | 3-661 |
| Cow position: | chr18:23798879-23799558 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 3-661 |
| Cow position: | chr18:29865381-29864697 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 219 |
| Conread position: | 3-661 |
| Cow position: | chr18:37507187-37507877 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 213 |
| Conread position: | 3-661 |
| Cow position: | chr18:47742732-47743405 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 317 |
| Conread position: | 3-661 |
| Cow position: | chr18:51342916-51343597 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 3-661 |
| Cow position: | chr18:51482099-51482768 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 3-661 |
| Cow position: | chr18:54004942-54004264 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-662 |
| Cow position: | chr18:33270172-33270815 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 4-660 |
| Cow position: | chr18:32768981-32769640 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 5-661 |
| Cow position: | chr18:51274814-51274167 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 15-616 |
| Cow position: | chr18:54271723-54272315 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 17-661 |
| Cow position: | chr18:54170266-54169609 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 18-431 |
| Cow position: | chr18:27837065-27836621 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 191 |
| Conread position: | 18-661 |
| Cow position: | chr18:25352501-25353175 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 359 |
| Conread position: | 18-662 |
| Cow position: | chr18:37663590-37664208 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 22-661 |
| Cow position: | chr18:46876083-46875455 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 32-296 |
| Cow position: | chr18:18851639-18851911 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 34-661 |
| Cow position: | chr18:27988446-27989100 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 180 |
| Conread position: | 47-610 |
| Cow position: | chr18:16089396-16089981 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 500 |
| Conread position: | 82-368 |
| Cow position: | chr18:5079163-5078866 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 82-661 |
| Cow position: | chr18:36509932-36510531 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 84-485 |
| Cow position: | chr18:56013906-56014315 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 154-662 |
| Cow position: | chr18:12992493-12992992 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 343 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 178-661 |
| Cow position: | chr18:25364588-25365082 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 197-641 |
| Cow position: | chr18:51593437-51593888 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 209-593 |
| Cow position: | chr18:17962295-17961906 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 134 |
| Conread position: | 209-662 |
| Cow position: | chr18:5534460-5534921 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 248-661 |
| Cow position: | chr18:24617631-24618047 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 267-661 |
| Cow position: | chr18:25921907-25922305 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 275-612 |
| Cow position: | chr18:27538382-27538726 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 257 |
| Conread position: | 295-661 |
| Cow position: | chr18:24714639-24714273 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 370-661 |
| Cow position: | chr18:32166300-32166015 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 108, 150 |
| Conread position: | 375-661 |
| Cow position: | chr18:11273229-11272944 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 147 |
| Conread position: | 397-656 |
| Cow position: | chr18:16137036-16136772 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 78, 136 |
| Conread position: | 397-662 |
| Cow position: | chr18:54106748-54107020 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 123 |
| Conread position: | 403-661 |
| Cow position: | chr18:52654472-52654726 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 404-661 |
| Cow position: | chr18:23660844-23660587 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 74, 119 |
| Conread position: | 413-656 |
| Cow position: | chr18:35290304-35290560 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 82 |
Show alignments to all cow chromosomes.