Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 3-441
Cow position: chr2:387105-386643 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 108

Conread position: 3-615
Cow position: chr2:15576163-15575533 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 3-616
Cow position: chr2:59413018-59412403 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 400
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 34, 298

Conread position: 3-659
Cow position: chr2:41687445-41688127 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-659
Cow position: chr2:47037759-47037072 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-659
Cow position: chr2:57336220-57336907 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-660
Cow position: chr2:47811523-47812210 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-660
Cow position: chr2:81257843-81258537 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 259

Conread position: 3-661
Cow position: chr2:174884-174205 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 103

Conread position: 3-661
Cow position: chr2:247202-246528 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 14

Conread position: 3-661
Cow position: chr2:282016-281324 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 219

Conread position: 3-661
Cow position: chr2:4402483-4401789 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 3-661
Cow position: chr2:9908589-9909285 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 3-661
Cow position: chr2:9958392-9957711 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 225

Conread position: 3-661
Cow position: chr2:10185553-10184864 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 368

Conread position: 3-661
Cow position: chr2:10610971-10610283 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-661
Cow position: chr2:11158447-11157759 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 3-661
Cow position: chr2:12223599-12222916 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 369

Conread position: 3-661
Cow position: chr2:13045038-13044346 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 554

Conread position: 3-661
Cow position: chr2:16900934-16901614 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 545

Conread position: 3-661
Cow position: chr2:19012029-19012718 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 429

Conread position: 3-661
Cow position: chr2:24925240-24925927 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 169

Conread position: 3-661
Cow position: chr2:25028617-25027944 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr2:26905079-26904414 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 438
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr2:26922101-26922789 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 109

Conread position: 3-661
Cow position: chr2:41048375-41047667 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 3-661
Cow position: chr2:50078262-50078920 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 3-661
Cow position: chr2:52617150-52617837 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr2:54738166-54738848 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 69

Conread position: 3-661
Cow position: chr2:65937557-65936866 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 121

Conread position: 3-661
Cow position: chr2:80292078-80291401 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 148

Conread position: 3-662
Cow position: chr2:364393-363705 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-662
Cow position: chr2:16074857-16074177 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 109

Conread position: 4-221
Cow position: chr2:315415-315196 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 102

Conread position: 4-476
Cow position: chr2:34473895-34473419 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 51

Conread position: 4-510
Cow position: chr2:19225556-19226082 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 200

Conread position: 4-551
Cow position: chr2:3323885-3323315 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 376
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 32, 108

Conread position: 4-642
Cow position: chr2:38374463-38375108 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 183

Conread position: 4-661
Cow position: chr2:6673921-6674592 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 22

Conread position: 4-661
Cow position: chr2:28648926-28648247 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 344

Conread position: 4-661
Cow position: chr2:28793923-28794607 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 245

Conread position: 4-661
Cow position: chr2:36052335-36051663 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 49

Conread position: 4-661
Cow position: chr2:39422300-39422985 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 108

Conread position: 4-661
Cow position: chr2:43961372-43962027 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 67

Conread position: 5-224
Cow position: chr2:74857893-74858125 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 5-380
Cow position: chr2:36992863-36993255 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 89

Conread position: 10-516
Cow position: chr2:36277711-36277205 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 101

Conread position: 10-531
Cow position: chr2:45967343-45966809 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 86

Conread position: 15-653
Cow position: chr2:72187800-72187143 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 16-300
Cow position: chr2:34563974-34563683 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 202

Conread position: 17-254
Cow position: chr2:3834276-3834027 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 21, 105

Conread position: 17-298
Cow position: chr2:5484319-5484052 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 38

Conread position: 17-612
Cow position: chr2:36029681-36029079 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 403
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 68, 20

Conread position: 17-661
Cow position: chr2:47602576-47601904 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 95

Conread position: 17-661
Cow position: chr2:53540627-53541301 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 108

Conread position: 18-661
Cow position: chr2:574283-574947 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 531

Conread position: 18-661
Cow position: chr2:5903631-5902985 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 75

Conread position: 18-661
Cow position: chr2:8119234-8119904 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 231

Conread position: 18-662
Cow position: chr2:72681419-72680776 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 19-661
Cow position: chr2:45938991-45938341 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 20-661
Cow position: chr2:25887855-25887188 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 354

Conread position: 20-661
Cow position: chr2:34051848-34052524 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 93

Conread position: 33-332
Cow position: chr2:28613626-28613299 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 48, 76

Conread position: 33-661
Cow position: chr2:32434610-32433968 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 345

Conread position: 34-588
Cow position: chr2:55483442-55482874 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 75

Conread position: 35-662
Cow position: chr2:32656356-32656997 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 74

Conread position: 40-661
Cow position: chr2:56801892-56801318 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 52

Conread position: 43-661
Cow position: chr2:6006122-6005487 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 189

Conread position: 62-661
Cow position: chr2:52063504-52064121 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 137

Conread position: 82-328
Cow position: chr2:41154584-41154843 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 102, 22

Conread position: 82-603
Cow position: chr2:50323888-50324381 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 351
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 180, 10

Conread position: 82-613
Cow position: chr2:905040-905574 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 18

Conread position: 82-661
Cow position: chr2:32065274-32064684 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 20

Conread position: 82-661
Cow position: chr2:41180903-41181461 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 20

Conread position: 117-661
Cow position: chr2:20872676-20872151 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 51

Conread position: 130-476
Cow position: chr2:51988969-51988611 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 238
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 80, 70

Conread position: 130-661
Cow position: chr2:11687304-11687800 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 351
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 84, 35

Conread position: 144-661
Cow position: chr2:36981221-36981748 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 128

Conread position: 146-661
Cow position: chr2:12696634-12696107 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 215

Conread position: 155-661
Cow position: chr2:72906380-72905857 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 48

Conread position: 161-661
Cow position: chr2:24926266-24926776 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 199

Conread position: 164-612
Cow position: chr2:85082082-85081641 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 172-661
Cow position: chr2:72688473-72688969 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 327
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 103, 7

Conread position: 186-640
Cow position: chr2:14823926-14824372 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 306
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 113, 17

Conread position: 193-661
Cow position: chr2:14209939-14209461 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 33

Conread position: 207-661
Cow position: chr2:56888633-56889099 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 308
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 51, 75

Conread position: 226-662
Cow position: chr2:50982226-50981785 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 149

Conread position: 228-516
Cow position: chr2:16283250-16283532 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 103

Conread position: 255-661
Cow position: chr2:53330741-53331161 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 81

Conread position: 287-649
Cow position: chr2:780425-780056 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 234
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 15, 241

Conread position: 293-661
Cow position: chr2:11558839-11559211 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 20, 234

Conread position: 296-661
Cow position: chr2:32639939-32640302 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 245
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 70, 8

Conread position: 302-612
Cow position: chr2:42361268-42360959 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 65, 37

Conread position: 303-661
Cow position: chr2:12479265-12478899 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 239
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 47

Conread position: 306-661
Cow position: chr2:62729515-62729872 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 36

Conread position: 365-659
Cow position: chr2:5869067-5868774 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 76

Conread position: 380-645
Cow position: chr2:53005166-53004901 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 143

Conread position: 387-661
Cow position: chr2:2601792-2602063 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 88, 36

Conread position: 402-661
Cow position: chr2:31454565-31454819 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 70, 120

Conread position: 403-661
Cow position: chr2:49303191-49302934 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 75, 56

Conread position: 404-661
Cow position: chr2:25022005-25022263 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 171
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 74, 118

Conread position: 408-661
Cow position: chr2:975577-975319 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 170
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 412-661
Cow position: chr2:74858458-74858693 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 136, 63

Conread position: 419-661
Cow position: chr2:67188728-67188968 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 103

Conread position: 433-661
Cow position: chr2:46049103-46048875 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 90

Show alignments to all cow chromosomes.