Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 1-254 |
| Cow position: | chr20:32349460-32349724 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 1-661 |
| Cow position: | chr20:32120527-32121192 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 3-260 |
| Cow position: | chr20:14869764-14869499 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-270 |
| Cow position: | chr20:13678853-13678569 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 3-298 |
| Cow position: | chr20:22210241-22210543 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 3-476 |
| Cow position: | chr20:12569715-12570203 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 169 |
| Conread position: | 3-524 |
| Cow position: | chr20:27870397-27870953 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 357 |
| Conread position: | 3-525 |
| Cow position: | chr20:13499303-13499853 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 3-640 |
| Cow position: | chr20:5536130-5536803 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 3-640 |
| Cow position: | chr20:18323743-18323092 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 3-660 |
| Cow position: | chr20:19439108-19439795 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 549 |
| Conread position: | 3-661 |
| Cow position: | chr20:823965-824647 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 3-661 |
| Cow position: | chr20:15293183-15293861 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 3-661 |
| Cow position: | chr20:17660549-17659863 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 546 |
| Conread position: | 3-661 |
| Cow position: | chr20:23468469-23467788 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 369 |
| Conread position: | 3-661 |
| Cow position: | chr20:29949711-29950404 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 3-661 |
| Cow position: | chr20:30429463-30430150 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 3-662 |
| Cow position: | chr20:18967693-18968360 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 4-661 |
| Cow position: | chr20:25849627-25848953 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 5-661 |
| Cow position: | chr20:23800080-23800765 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 5-662 |
| Cow position: | chr20:5791534-5792163 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 427 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 16-615 |
| Cow position: | chr20:9344174-9344778 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 17-476 |
| Cow position: | chr20:27896820-27896351 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 18-659 |
| Cow position: | chr20:30686781-30687459 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 18-661 |
| Cow position: | chr20:13764110-13764776 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 19-661 |
| Cow position: | chr20:9546878-9547526 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 19-661 |
| Cow position: | chr20:21915840-21916517 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 363 |
| Conread position: | 19-661 |
| Cow position: | chr20:28564373-28563696 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 33-187 |
| Cow position: | chr20:10839499-10839342 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 33-661 |
| Cow position: | chr20:15096663-15096013 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 38 |
| Conread position: | 40-661 |
| Cow position: | chr20:24615658-24615029 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 92-656 |
| Cow position: | chr20:926107-925537 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 157, 44 |
| Conread position: | 133-661 |
| Cow position: | chr20:28162168-28162705 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 137-661 |
| Cow position: | chr20:41364295-41363765 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 224-661 |
| Cow position: | chr20:35126091-35126536 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 34, 287 |
| Conread position: | 232-616 |
| Cow position: | chr20:21717863-21718266 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 256-649 |
| Cow position: | chr20:13793496-13793885 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 258-661 |
| Cow position: | chr20:20441483-20441071 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 274 |
| Conread position: | 303-661 |
| Cow position: | chr20:13678324-13677969 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 310-622 |
| Cow position: | chr20:12041957-12042262 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 316-661 |
| Cow position: | chr20:25899226-25899568 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 366-661 |
| Cow position: | chr20:8366140-8365842 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 154, 0 |
Show alignments to all cow chromosomes.