Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 1-661 |
| Cow position: | chr21:147234-147912 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 3-199 |
| Cow position: | chr21:21915995-21916207 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 3-315 |
| Cow position: | chr21:5839957-5839631 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 244 |
| Conread position: | 3-391 |
| Cow position: | chr21:35145065-35145466 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 149 |
| Conread position: | 3-471 |
| Cow position: | chr21:28985412-28985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 3-598 |
| Cow position: | chr21:33253488-33254108 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 194 |
| Conread position: | 3-661 |
| Cow position: | chr21:2512153-2512841 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr21:3780076-3780767 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 376 |
| Conread position: | 3-661 |
| Cow position: | chr21:27069655-27068972 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-661 |
| Cow position: | chr21:27284774-27285439 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 314 |
| Conread position: | 3-661 |
| Cow position: | chr21:30598174-30597478 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 362 |
| Conread position: | 3-661 |
| Cow position: | chr21:37372544-37373218 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr21:40270366-40269679 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 3-661 |
| Cow position: | chr21:47646638-47647324 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-662 |
| Cow position: | chr21:47942253-47942940 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 5-368 |
| Cow position: | chr21:23804800-23804424 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 35, 114 |
| Conread position: | 5-588 |
| Cow position: | chr21:10851394-10851994 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 11-531 |
| Cow position: | chr21:49296205-49296722 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 12-661 |
| Cow position: | chr21:37149351-37149966 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 17-661 |
| Cow position: | chr21:26635837-26635165 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 18-365 |
| Cow position: | chr21:28736496-28736854 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 18-661 |
| Cow position: | chr21:10568024-10568689 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 18-661 |
| Cow position: | chr21:31514995-31514325 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 532 |
| Conread position: | 18-662 |
| Cow position: | chr21:4181895-4182549 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 19-661 |
| Cow position: | chr21:5018463-5019134 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 33-588 |
| Cow position: | chr21:2712275-2712813 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 33-661 |
| Cow position: | chr21:1286867-1286210 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 49-655 |
| Cow position: | chr21:29004174-29003534 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 52-661 |
| Cow position: | chr21:19612114-19612752 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 82-659 |
| Cow position: | chr21:38023535-38024113 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 82-662 |
| Cow position: | chr21:22752012-22751453 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 24 |
| Conread position: | 85-662 |
| Cow position: | chr21:21943181-21942574 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 119-661 |
| Cow position: | chr21:39426507-39427057 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 234 |
| Conread position: | 120-661 |
| Cow position: | chr21:31250452-31250985 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 130-588 |
| Cow position: | chr21:38801883-38802354 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 408 |
| Conread position: | 130-661 |
| Cow position: | chr21:34655287-34655822 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 131-662 |
| Cow position: | chr21:29257629-29257115 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 34 |
| Conread position: | 132-660 |
| Cow position: | chr21:26836631-26837181 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 391 |
| Conread position: | 136-661 |
| Cow position: | chr21:28256896-28257411 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 143-661 |
| Cow position: | chr21:30563135-30563656 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 154-383 |
| Cow position: | chr21:9865823-9865597 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 185-661 |
| Cow position: | chr21:6414522-6414032 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 352 |
| Conread position: | 186-662 |
| Cow position: | chr21:25125110-25125594 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 169 |
| Conread position: | 194-661 |
| Cow position: | chr21:997325-996846 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 258-605 |
| Cow position: | chr21:33710729-33711083 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 274 |
| Conread position: | 288-632 |
| Cow position: | chr21:21701529-21701864 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 288-662 |
| Cow position: | chr21:1688544-1688180 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 186, 41 |
| Conread position: | 297-661 |
| Cow position: | chr21:34000468-34000086 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 303-661 |
| Cow position: | chr21:44764318-44763962 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 175, 41 |
| Conread position: | 360-606 |
| Cow position: | chr21:26649018-26648779 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 370-616 |
| Cow position: | chr21:27150181-27150429 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 153 |
Show alignments to all cow chromosomes.