Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 2-566 |
| Cow position: | chr24:6659278-6658685 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 377 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 3-404 |
| Cow position: | chr24:35840843-35840440 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 3-428 |
| Cow position: | chr24:12699598-12699150 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 3-471 |
| Cow position: | chr24:6407257-6407749 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 3-653 |
| Cow position: | chr24:40470149-40469477 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 428 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 3-659 |
| Cow position: | chr24:19834616-19835308 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 383 |
| Conread position: | 3-661 |
| Cow position: | chr24:147390-146703 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 371 |
| Conread position: | 3-661 |
| Cow position: | chr24:5888031-5887346 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 420 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 3-661 |
| Cow position: | chr24:7062761-7063446 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 3-661 |
| Cow position: | chr24:9090832-9090154 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 3-661 |
| Cow position: | chr24:12150092-12149384 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 456 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 377 |
| Conread position: | 3-661 |
| Cow position: | chr24:16561105-16560403 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr24:17321933-17322582 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 430 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 3-661 |
| Cow position: | chr24:22972312-22972971 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 3-661 |
| Cow position: | chr24:23504643-23503953 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 3-661 |
| Cow position: | chr24:29188512-29189193 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 371 |
| Conread position: | 3-661 |
| Cow position: | chr24:33934608-33935294 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr24:35869341-35868683 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 219 |
| Conread position: | 3-662 |
| Cow position: | chr24:6353364-6354042 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 4-661 |
| Cow position: | chr24:13233478-13234154 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 359 |
| Conread position: | 4-661 |
| Cow position: | chr24:38585899-38585229 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 221 |
| Conread position: | 5-604 |
| Cow position: | chr24:17300680-17300065 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 5-656 |
| Cow position: | chr24:37199668-37199016 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 5-659 |
| Cow position: | chr24:17409701-17410363 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 6-661 |
| Cow position: | chr24:13189409-13190070 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 11-661 |
| Cow position: | chr24:14871093-14870421 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 18-256 |
| Cow position: | chr24:36558531-36558290 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 18-438 |
| Cow position: | chr24:6142321-6142753 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 18-659 |
| Cow position: | chr24:14383399-14382725 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 18-661 |
| Cow position: | chr24:4414299-4413653 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 19-662 |
| Cow position: | chr24:38638770-38639435 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 33-345 |
| Cow position: | chr24:37320339-37320031 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 33-661 |
| Cow position: | chr24:36298689-36299318 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 34-661 |
| Cow position: | chr24:13179762-13179117 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 42-607 |
| Cow position: | chr24:9545316-9545906 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 48-662 |
| Cow position: | chr24:32847297-32847926 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 82-294 |
| Cow position: | chr24:10222861-10222643 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 82-635 |
| Cow position: | chr24:29352533-29351980 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 368 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 82-661 |
| Cow position: | chr24:12127805-12127204 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 119-661 |
| Cow position: | chr24:13044277-13043722 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 418 |
| Conread position: | 119-661 |
| Cow position: | chr24:42584404-42583856 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 121-615 |
| Cow position: | chr24:6023735-6023230 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 133-661 |
| Cow position: | chr24:12334363-12333832 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 165-661 |
| Cow position: | chr24:14755395-14755905 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 185 |
| Conread position: | 219-527 |
| Cow position: | chr24:12569480-12569792 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 244-661 |
| Cow position: | chr24:6963274-6962844 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 292 |
| Conread position: | 259-526 |
| Cow position: | chr24:6060926-6061182 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 266-659 |
| Cow position: | chr24:36558048-36557666 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 180, 79 |
| Conread position: | 283-661 |
| Cow position: | chr24:20286385-20286006 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 297-661 |
| Cow position: | chr24:17958006-17957625 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 370-661 |
| Cow position: | chr24:40468785-40469080 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 377-661 |
| Cow position: | chr24:30865121-30865403 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 20 |
| Conread position: | 403-661 |
| Cow position: | chr24:25438250-25438508 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 79, 129 |
| Conread position: | 426-661 |
| Cow position: | chr24:209337-209103 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 429-661 |
| Cow position: | chr24:19183838-19184071 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 431-657 |
| Cow position: | chr24:9081139-9080924 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 432-661 |
| Cow position: | chr24:16082823-16082594 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 438-662 |
| Cow position: | chr24:2723773-2723989 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 180, 52 |
Show alignments to all cow chromosomes.