Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 3-198 |
| Cow position: | chr28:11490074-11489875 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 31, 171 |
| Conread position: | 3-233 |
| Cow position: | chr28:5913275-5913038 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 3-283 |
| Cow position: | chr28:10496350-10496064 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-439 |
| Cow position: | chr28:5567322-5567768 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 3-615 |
| Cow position: | chr28:7741624-7742251 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-615 |
| Cow position: | chr28:29821178-29821806 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 122 |
| Conread position: | 3-637 |
| Cow position: | chr28:5765914-5766572 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 361 |
| Conread position: | 3-659 |
| Cow position: | chr28:1166697-1166030 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 3-661 |
| Cow position: | chr28:484413-483728 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 3-661 |
| Cow position: | chr28:783839-784523 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 545 |
| Conread position: | 3-661 |
| Cow position: | chr28:1506049-1506732 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 209 |
| Conread position: | 3-661 |
| Cow position: | chr28:1954536-1955221 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 124 |
| Conread position: | 3-661 |
| Cow position: | chr28:3191073-3190386 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr28:5750525-5749838 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 374 |
| Conread position: | 3-661 |
| Cow position: | chr28:5938669-5939353 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr28:7003179-7003866 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-661 |
| Cow position: | chr28:8380246-8380902 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 3-661 |
| Cow position: | chr28:14704205-14703518 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 183 |
| Conread position: | 3-661 |
| Cow position: | chr28:15034941-15034245 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 3-661 |
| Cow position: | chr28:17389583-17390269 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 370 |
| Conread position: | 3-661 |
| Cow position: | chr28:17666124-17665461 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 369 |
| Conread position: | 3-661 |
| Cow position: | chr28:18519266-18518581 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr28:22259969-22259291 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 543 |
| Conread position: | 3-661 |
| Cow position: | chr28:24590039-24590722 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 3-661 |
| Cow position: | chr28:26425072-26424395 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 207 |
| Conread position: | 3-661 |
| Cow position: | chr28:33253488-33254169 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 3-662 |
| Cow position: | chr28:32791196-32790532 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 4-531 |
| Cow position: | chr28:5803222-5803756 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 4-661 |
| Cow position: | chr28:7811621-7812283 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 439 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 4-661 |
| Cow position: | chr28:7827170-7827844 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 5-660 |
| Cow position: | chr28:15587272-15587929 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 6-661 |
| Cow position: | chr28:24668795-24669463 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 17-661 |
| Cow position: | chr28:6778745-6778075 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 18-588 |
| Cow position: | chr28:10646228-10645647 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 18-661 |
| Cow position: | chr28:12409038-12408357 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 18-661 |
| Cow position: | chr28:22232081-22231426 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 194 |
| Conread position: | 19-661 |
| Cow position: | chr28:2085657-2086331 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 340 |
| Conread position: | 24-661 |
| Cow position: | chr28:1216633-1215973 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 39-659 |
| Cow position: | chr28:8719739-8719097 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 81-662 |
| Cow position: | chr28:22457064-22457633 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 82-476 |
| Cow position: | chr28:6786533-6786930 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 82-523 |
| Cow position: | chr28:2117250-2117724 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 82-661 |
| Cow position: | chr28:18100212-18099648 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 84-661 |
| Cow position: | chr28:34595503-34596097 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 85-595 |
| Cow position: | chr28:20634789-20634265 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 117-660 |
| Cow position: | chr28:7707379-7706834 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 367 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 117-662 |
| Cow position: | chr28:10615686-10615140 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 371 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 130-607 |
| Cow position: | chr28:6537489-6537000 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 407 |
| Conread position: | 130-661 |
| Cow position: | chr28:1459416-1459961 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 407 |
| Conread position: | 136-661 |
| Cow position: | chr28:10580541-10580009 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 155-661 |
| Cow position: | chr28:33637888-33638404 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 208 |
| Conread position: | 172-660 |
| Cow position: | chr28:27679509-27680006 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 179-523 |
| Cow position: | chr28:15574525-15574854 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 256-661 |
| Cow position: | chr28:5814685-5815071 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 64 |
| Conread position: | 256-661 |
| Cow position: | chr28:9288402-9288813 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 273 |
| Conread position: | 272-661 |
| Cow position: | chr28:7059194-7058802 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 288-661 |
| Cow position: | chr28:1765470-1765841 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 161 |
| Conread position: | 304-645 |
| Cow position: | chr28:15673844-15674176 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 171, 25 |
| Conread position: | 354-661 |
| Cow position: | chr28:24884414-24884711 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 370-661 |
| Cow position: | chr28:31591134-31591425 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 108, 153 |
| Conread position: | 370-661 |
| Cow position: | chr28:34202078-34201789 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 108, 124 |
| Conread position: | 420-661 |
| Cow position: | chr28:15998728-15998969 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 103 |
Show alignments to all cow chromosomes.