Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 1-332 |
| Cow position: | chr29:21425871-21425527 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 3-196 |
| Cow position: | chr29:43323705-43323909 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 3-297 |
| Cow position: | chr29:10647102-10646797 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 165 |
| Conread position: | 3-332 |
| Cow position: | chr29:3328481-3328832 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 3-381 |
| Cow position: | chr29:13651197-13651588 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 3-484 |
| Cow position: | chr29:14084982-14084475 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 182 |
| Conread position: | 3-484 |
| Cow position: | chr29:15997504-15996997 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-595 |
| Cow position: | chr29:5958737-5959337 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 3-609 |
| Cow position: | chr29:42803558-42804167 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 397 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 3-610 |
| Cow position: | chr29:27979777-27979144 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 411 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 3-659 |
| Cow position: | chr29:14587068-14587752 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr29:47291-46632 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr29:609496-608818 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 3-661 |
| Cow position: | chr29:2465708-2465046 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 3-661 |
| Cow position: | chr29:2840195-2839511 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 3-661 |
| Cow position: | chr29:7845534-7846220 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr29:13583226-13583911 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr29:13622710-13622028 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 116 |
| Conread position: | 3-661 |
| Cow position: | chr29:25931383-25930689 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 552 |
| Conread position: | 3-661 |
| Cow position: | chr29:31182551-31183232 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 3-661 |
| Cow position: | chr29:32541242-32541925 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 368 |
| Conread position: | 3-661 |
| Cow position: | chr29:32558610-32557921 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 3-661 |
| Cow position: | chr29:34798662-34797981 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 367 |
| Conread position: | 3-661 |
| Cow position: | chr29:39078557-39077882 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr29:45205647-45206360 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 462 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 3-662 |
| Cow position: | chr29:3176274-3175626 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 3-662 |
| Cow position: | chr29:5236164-5236855 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 3-662 |
| Cow position: | chr29:38207528-38206833 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 129 |
| Conread position: | 6-661 |
| Cow position: | chr29:19622132-19621437 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 16-482 |
| Cow position: | chr29:2747280-2746810 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 17-661 |
| Cow position: | chr29:8664669-8665337 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 18-379 |
| Cow position: | chr29:3699117-3699483 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 18-661 |
| Cow position: | chr29:16023732-16024393 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 18-661 |
| Cow position: | chr29:20252329-20252999 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 134 |
| Conread position: | 20-595 |
| Cow position: | chr29:45460906-45461508 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 357 |
| Conread position: | 20-653 |
| Cow position: | chr29:38228142-38228799 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 20-660 |
| Cow position: | chr29:19654791-19655447 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 26-662 |
| Cow position: | chr29:2182817-2183444 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 409 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 279 |
| Conread position: | 33-661 |
| Cow position: | chr29:2691345-2691992 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 314 |
| Conread position: | 33-661 |
| Cow position: | chr29:6264820-6264169 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 81-639 |
| Cow position: | chr29:4633389-4632836 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 82-598 |
| Cow position: | chr29:36635153-36634619 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 349 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 82-661 |
| Cow position: | chr29:2949123-2948545 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 82-661 |
| Cow position: | chr29:21431621-21431025 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 82-661 |
| Cow position: | chr29:27180522-27179923 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 82-661 |
| Cow position: | chr29:40501766-40501180 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 82-662 |
| Cow position: | chr29:30259296-30258716 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 84-438 |
| Cow position: | chr29:12793467-12793845 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 86-661 |
| Cow position: | chr29:647062-647637 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 92-661 |
| Cow position: | chr29:35298160-35298740 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 138 |
| Conread position: | 120-661 |
| Cow position: | chr29:36596800-36596249 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 122-661 |
| Cow position: | chr29:19888861-19889413 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 123-661 |
| Cow position: | chr29:14210269-14209722 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 130-661 |
| Cow position: | chr29:2101124-2101668 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 231 |
| Conread position: | 130-661 |
| Cow position: | chr29:10023047-10022502 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 407 |
| Conread position: | 137-517 |
| Cow position: | chr29:4516857-4517249 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 6 |
| Conread position: | 139-661 |
| Cow position: | chr29:32287541-32288076 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 236 |
| Conread position: | 157-603 |
| Cow position: | chr29:23905150-23905596 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 206-661 |
| Cow position: | chr29:10822555-10822091 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 142 |
| Conread position: | 209-661 |
| Cow position: | chr29:19526921-19526456 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 327 |
| Conread position: | 209-662 |
| Cow position: | chr29:7429759-7429289 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 149 |
| Conread position: | 235-661 |
| Cow position: | chr29:9641395-9640954 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 23, 138 |
| Conread position: | 245-661 |
| Cow position: | chr29:13018103-13018520 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 204 |
| Conread position: | 296-661 |
| Cow position: | chr29:45624855-45625220 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 304-661 |
| Cow position: | chr29:8625736-8625365 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 314-661 |
| Cow position: | chr29:27812568-27812913 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 369-660 |
| Cow position: | chr29:10645872-10645582 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 153 |
| Conread position: | 375-661 |
| Cow position: | chr29:17151791-17152081 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 102, 70 |
| Conread position: | 430-661 |
| Cow position: | chr29:12794079-12794308 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 91 |
Show alignments to all cow chromosomes.