Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 1-661 |
| Cow position: | chr4:50975493-50976164 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 3-438 |
| Cow position: | chr4:45106327-45106792 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 3-445 |
| Cow position: | chr4:69521404-69521852 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 3-586 |
| Cow position: | chr4:16360782-16361393 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 391 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 34, 191 |
| Conread position: | 3-616 |
| Cow position: | chr4:20604596-20605181 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 3-640 |
| Cow position: | chr4:6489497-6488840 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 337 |
| Conread position: | 3-659 |
| Cow position: | chr4:356778-357452 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr4:99349-98664 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:160029-160706 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 149 |
| Conread position: | 3-661 |
| Cow position: | chr4:1049390-1048715 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 3-661 |
| Cow position: | chr4:1929774-1929090 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 379 |
| Conread position: | 3-661 |
| Cow position: | chr4:3126671-3127359 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 123 |
| Conread position: | 3-661 |
| Cow position: | chr4:5443965-5443276 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr4:5881023-5881704 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:6567253-6567928 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 3-661 |
| Cow position: | chr4:12240350-12239686 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 3-661 |
| Cow position: | chr4:13494197-13494881 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:14755799-14755126 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 3-661 |
| Cow position: | chr4:16639479-16640157 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 211 |
| Conread position: | 3-661 |
| Cow position: | chr4:17092998-17092316 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 3-661 |
| Cow position: | chr4:18337721-18338402 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 544 |
| Conread position: | 3-661 |
| Cow position: | chr4:18423656-18422974 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:26876913-26876239 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 229 |
| Conread position: | 3-661 |
| Cow position: | chr4:30472099-30472762 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 3-661 |
| Cow position: | chr4:32213031-32213721 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 216 |
| Conread position: | 3-661 |
| Cow position: | chr4:34183760-34183129 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 3-661 |
| Cow position: | chr4:36897243-36897922 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 368 |
| Conread position: | 3-661 |
| Cow position: | chr4:41191736-41191083 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:41955628-41956312 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 3-661 |
| Cow position: | chr4:41959763-41960448 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 3-661 |
| Cow position: | chr4:43318773-43318087 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 212 |
| Conread position: | 3-661 |
| Cow position: | chr4:44780358-44779677 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 3-661 |
| Cow position: | chr4:57984854-57985540 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 3-661 |
| Cow position: | chr4:60263293-60262618 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr4:67682060-67682747 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 361 |
| Conread position: | 3-662 |
| Cow position: | chr4:33071951-33071289 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 4-484 |
| Cow position: | chr4:51042427-51041918 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 363 |
| Conread position: | 4-524 |
| Cow position: | chr4:9847346-9846794 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 546 |
| Conread position: | 4-659 |
| Cow position: | chr4:530272-530965 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 557 |
| Conread position: | 4-661 |
| Cow position: | chr4:17925095-17924412 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 4-661 |
| Cow position: | chr4:57957864-57958500 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 5-299 |
| Cow position: | chr4:44924663-44924359 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 5-655 |
| Cow position: | chr4:28149290-28149953 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 6-242 |
| Cow position: | chr4:967209-966952 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 121 |
| Conread position: | 11-661 |
| Cow position: | chr4:22474224-22474869 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 17-285 |
| Cow position: | chr4:11110398-11110117 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 18-394 |
| Cow position: | chr4:4178138-4178529 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 186 |
| Conread position: | 18-661 |
| Cow position: | chr4:19005427-19004782 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 20-655 |
| Cow position: | chr4:44726471-44727121 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 182 |
| Conread position: | 33-659 |
| Cow position: | chr4:6206505-6207145 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 82-661 |
| Cow position: | chr4:9355333-9355928 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 82-661 |
| Cow position: | chr4:25598536-25597937 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 114-616 |
| Cow position: | chr4:65665404-65664910 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 115-652 |
| Cow position: | chr4:33596520-33597060 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 119-661 |
| Cow position: | chr4:22027447-22026908 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 119-661 |
| Cow position: | chr4:33494549-33495105 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 122-662 |
| Cow position: | chr4:31638921-31638379 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 124-661 |
| Cow position: | chr4:1952569-1952015 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 130-661 |
| Cow position: | chr4:6865498-6864959 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 136 |
| Conread position: | 130-661 |
| Cow position: | chr4:16060268-16060828 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 421 |
| Conread position: | 140-661 |
| Cow position: | chr4:17502317-17501782 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 397 |
| Conread position: | 149-653 |
| Cow position: | chr4:14386844-14387363 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 389 |
| Conread position: | 152-661 |
| Cow position: | chr4:28653466-28652946 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 164-661 |
| Cow position: | chr4:21258200-21258724 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 356 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 178-616 |
| Cow position: | chr4:20236345-20235896 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 357 |
| Conread position: | 183-661 |
| Cow position: | chr4:34221801-34222297 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 194-661 |
| Cow position: | chr4:3356863-3356385 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 199-654 |
| Cow position: | chr4:8702644-8703092 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 206-655 |
| Cow position: | chr4:19094067-19094514 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 220-661 |
| Cow position: | chr4:44107306-44106855 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 310 |
| Conread position: | 288-661 |
| Cow position: | chr4:48028038-48028405 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 296-661 |
| Cow position: | chr4:33022456-33022091 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 298-645 |
| Cow position: | chr4:964116-963791 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 310-661 |
| Cow position: | chr4:827403-827757 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 216 |
| Conread position: | 313-588 |
| Cow position: | chr4:17244311-17244580 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 165, 42 |
| Conread position: | 320-649 |
| Cow position: | chr4:45297356-45297034 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 355-661 |
| Cow position: | chr4:6267950-6267643 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 170 |
| Conread position: | 364-662 |
| Cow position: | chr4:12459318-12459030 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 376-616 |
| Cow position: | chr4:20241783-20242021 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 102, 146 |
| Conread position: | 379-645 |
| Cow position: | chr4:68837731-68837464 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 154 |
| Conread position: | 406-662 |
| Cow position: | chr4:17475970-17476218 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 416-661 |
| Cow position: | chr4:43898238-43897988 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 430-662 |
| Cow position: | chr4:19252888-19253113 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 92 |
| Conread position: | 450-661 |
| Cow position: | chr4:65222422-65222211 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 458-661 |
| Cow position: | chr4:9133924-9133720 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 65 |
Show alignments to all cow chromosomes.