Cow genome map
| Conread name: | Emb1-C0005196_A24 |
| Conread position: | 1-662 |
| Cow position: | chr5:18885570-18884898 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 3-203 |
| Cow position: | chr5:48137383-48137170 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 3-260 |
| Cow position: | chr5:73488595-73488322 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-328 |
| Cow position: | chr5:24107719-24107388 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 170 |
| Conread position: | 3-361 |
| Cow position: | chr5:54860957-54860581 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 3-400 |
| Cow position: | chr5:34697569-34697988 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 3-473 |
| Cow position: | chr5:49519525-49520012 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 3-602 |
| Cow position: | chr5:35301063-35301689 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-645 |
| Cow position: | chr5:18273726-18274383 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 3-659 |
| Cow position: | chr5:10855852-10855170 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 373 |
| Conread position: | 3-659 |
| Cow position: | chr5:18121518-18120832 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-660 |
| Cow position: | chr5:46004891-46004226 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 286 |
| Conread position: | 3-661 |
| Cow position: | chr5:988097-987416 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 3-661 |
| Cow position: | chr5:3503141-3502454 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr5:3965411-3966097 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr5:4018230-4017560 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 3-661 |
| Cow position: | chr5:4757212-4756531 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-661 |
| Cow position: | chr5:7274809-7275481 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 3-661 |
| Cow position: | chr5:10775304-10774611 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 555 |
| Conread position: | 3-661 |
| Cow position: | chr5:10813786-10813098 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 3-661 |
| Cow position: | chr5:10842420-10841728 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 3-661 |
| Cow position: | chr5:12731745-12731063 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr5:18560438-18559758 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 3-661 |
| Cow position: | chr5:23229958-23230626 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 3-661 |
| Cow position: | chr5:23959364-23958678 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 3-661 |
| Cow position: | chr5:24151744-24152431 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 202 |
| Conread position: | 3-661 |
| Cow position: | chr5:26078228-26077543 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 3-661 |
| Cow position: | chr5:32773730-32774417 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 3-661 |
| Cow position: | chr5:37733311-37734004 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 168 |
| Conread position: | 3-661 |
| Cow position: | chr5:46737612-46736942 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 3-661 |
| Cow position: | chr5:46777358-46778045 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 3-661 |
| Cow position: | chr5:47830113-47829423 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 549 |
| Conread position: | 3-661 |
| Cow position: | chr5:48807774-48807080 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 258 |
| Conread position: | 3-661 |
| Cow position: | chr5:55628956-55629635 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 324 |
| Conread position: | 3-661 |
| Cow position: | chr5:58151816-58151152 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 3-661 |
| Cow position: | chr5:58196980-58197668 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-661 |
| Cow position: | chr5:59061601-59062288 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 3-661 |
| Cow position: | chr5:64781051-64780363 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 375 |
| Conread position: | 3-662 |
| Cow position: | chr5:45701279-45701970 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 4-224 |
| Cow position: | chr5:53624957-53624721 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 7-245 |
| Cow position: | chr5:28949913-28949658 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 11-517 |
| Cow position: | chr5:32363923-32364409 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 16-661 |
| Cow position: | chr5:41527818-41527153 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 18-661 |
| Cow position: | chr5:24099645-24100299 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 348 |
| Conread position: | 18-661 |
| Cow position: | chr5:30580319-30580986 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 19-661 |
| Cow position: | chr5:2915430-2916085 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 20-661 |
| Cow position: | chr5:3786908-3787589 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 168 |
| Conread position: | 33-428 |
| Cow position: | chr5:32281767-32281359 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 34-661 |
| Cow position: | chr5:7143048-7142422 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 82-622 |
| Cow position: | chr5:7811200-7810638 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 82-649 |
| Cow position: | chr5:11115697-11115137 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 82-661 |
| Cow position: | chr5:18400630-18400054 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 82-661 |
| Cow position: | chr5:48533042-48533605 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 120-602 |
| Cow position: | chr5:35527037-35527515 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 122-645 |
| Cow position: | chr5:34190014-34190558 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 225 |
| Conread position: | 130-661 |
| Cow position: | chr5:6587477-6586936 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 403 |
| Conread position: | 133-384 |
| Cow position: | chr5:41897379-41897121 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 139-659 |
| Cow position: | chr5:10919956-10920485 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 348 |
| Conread position: | 165-661 |
| Cow position: | chr5:49223346-49222838 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 289 |
| Conread position: | 174-604 |
| Cow position: | chr5:41956261-41955836 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 207-661 |
| Cow position: | chr5:50947815-50948300 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 177 |
| Conread position: | 207-661 |
| Cow position: | chr5:76096238-76096703 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 310 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 219-661 |
| Cow position: | chr5:27197806-27198260 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 317 |
| Conread position: | 239-611 |
| Cow position: | chr5:41376637-41376254 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 297 |
| Conread position: | 242-661 |
| Cow position: | chr5:4684584-4684153 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 20, 293 |
| Conread position: | 262-661 |
| Cow position: | chr5:40131359-40130950 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 271 |
| Conread position: | 267-661 |
| Cow position: | chr5:307164-306762 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 34, 146 |
| Conread position: | 303-661 |
| Cow position: | chr5:37378417-37378778 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 27, 231 |
| Conread position: | 304-616 |
| Cow position: | chr5:2975082-2975395 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 222 |
| Conread position: | 358-661 |
| Cow position: | chr5:43988451-43988750 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 136 |
| Conread position: | 370-615 |
| Cow position: | chr5:34698011-34698255 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 152 |
| Conread position: | 371-603 |
| Cow position: | chr5:57816331-57816101 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 127 |
| Conread position: | 403-615 |
| Cow position: | chr5:46646369-46646578 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 403-661 |
| Cow position: | chr5:3424752-3425014 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 403-661 |
| Cow position: | chr5:58191368-58191109 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 119 |
| Conread position: | 435-661 |
| Cow position: | chr5:37049229-37049461 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 88 |
Show alignments to all cow chromosomes.