Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 2-350
Cow position: chr6:64717129-64717498 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 14

Conread position: 2-662
Cow position: chr6:8760191-8759502 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 124

Conread position: 3-201
Cow position: chr6:2577045-2577256 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 108

Conread position: 3-298
Cow position: chr6:29312606-29312924 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 34, 215

Conread position: 3-300
Cow position: chr6:69391416-69391102 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 34, 151

Conread position: 3-318
Cow position: chr6:3784872-3785209 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 34, 121

Conread position: 3-328
Cow position: chr6:27471684-27472029 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 199

Conread position: 3-417
Cow position: chr6:25360149-25360586 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 291
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 108

Conread position: 3-476
Cow position: chr6:28134022-28134513 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 28

Conread position: 3-604
Cow position: chr6:2375792-2376405 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-653
Cow position: chr6:10250502-10249825 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 73

Conread position: 3-653
Cow position: chr6:39333764-39333088 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 123

Conread position: 3-655
Cow position: chr6:65842720-65843399 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 51

Conread position: 3-661
Cow position: chr6:50501-49816 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-661
Cow position: chr6:330360-329676 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 3-661
Cow position: chr6:914738-915423 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 365

Conread position: 3-661
Cow position: chr6:1535471-1534792 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr6:1821508-1820839 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr6:2877582-2876895 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 52

Conread position: 3-661
Cow position: chr6:5948678-5947988 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr6:12665213-12664531 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 46

Conread position: 3-661
Cow position: chr6:26669758-26669073 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 3-661
Cow position: chr6:28104755-28104074 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 217

Conread position: 3-661
Cow position: chr6:28187718-28187049 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 109

Conread position: 3-661
Cow position: chr6:28490464-28489780 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 123

Conread position: 3-661
Cow position: chr6:30273790-30273104 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 548

Conread position: 3-661
Cow position: chr6:34891019-34890341 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 122

Conread position: 3-661
Cow position: chr6:39910439-39911118 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 429

Conread position: 3-661
Cow position: chr6:40276191-40276872 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 108

Conread position: 3-661
Cow position: chr6:40326520-40327207 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 51

Conread position: 3-661
Cow position: chr6:40379529-40378842 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 109

Conread position: 3-661
Cow position: chr6:40553469-40552793 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 191

Conread position: 3-661
Cow position: chr6:40866219-40865537 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 445

Conread position: 3-661
Cow position: chr6:43792467-43791793 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 505

Conread position: 3-661
Cow position: chr6:44149452-44148759 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 3-661
Cow position: chr6:51731188-51731867 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 11

Conread position: 3-661
Cow position: chr6:55542159-55541470 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 128

Conread position: 3-661
Cow position: chr6:58065842-58066505 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 109

Conread position: 4-221
Cow position: chr6:17244307-17244076 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 108

Conread position: 4-260
Cow position: chr6:48579882-48579613 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 136

Conread position: 4-660
Cow position: chr6:7178183-7177505 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 61

Conread position: 4-661
Cow position: chr6:52694127-52694815 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 71

Conread position: 4-662
Cow position: chr6:59617221-59617871 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 27

Conread position: 5-661
Cow position: chr6:7140236-7139551 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 5-661
Cow position: chr6:15478280-15478959 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 120

Conread position: 5-662
Cow position: chr6:1382213-1381554 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 169

Conread position: 10-661
Cow position: chr6:43618833-43619513 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 205

Conread position: 11-485
Cow position: chr6:7834629-7835101 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 82

Conread position: 11-661
Cow position: chr6:66546600-66547262 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 113

Conread position: 16-661
Cow position: chr6:10609991-10610632 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 111

Conread position: 17-298
Cow position: chr6:17597189-17596891 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 189

Conread position: 17-661
Cow position: chr6:45587067-45587737 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 95

Conread position: 18-603
Cow position: chr6:47042097-47041475 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 345

Conread position: 18-659
Cow position: chr6:21973790-21974455 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 442

Conread position: 18-661
Cow position: chr6:703334-704001 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 353

Conread position: 18-661
Cow position: chr6:3888386-3887727 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 178

Conread position: 18-661
Cow position: chr6:27528877-27528230 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 178

Conread position: 18-661
Cow position: chr6:41228565-41229233 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 196

Conread position: 18-661
Cow position: chr6:51715647-51716322 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 31

Conread position: 18-662
Cow position: chr6:35875592-35874923 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 357

Conread position: 19-652
Cow position: chr6:15926446-15925786 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 179

Conread position: 31-662
Cow position: chr6:28276962-28277562 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 409
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 191, 33

Conread position: 34-661
Cow position: chr6:3487289-3486635 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 331

Conread position: 36-261
Cow position: chr6:87783-88017 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 46, 73

Conread position: 82-659
Cow position: chr6:21835980-21835412 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 20

Conread position: 82-661
Cow position: chr6:11723981-11723410 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 82-661
Cow position: chr6:28703520-28702920 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 101-298
Cow position: chr6:30677074-30676876 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 92

Conread position: 114-661
Cow position: chr6:3571815-3572384 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 255

Conread position: 114-662
Cow position: chr6:44001896-44002461 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 253

Conread position: 115-660
Cow position: chr6:3150460-3151024 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 62

Conread position: 121-661
Cow position: chr6:8203427-8203984 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 238

Conread position: 121-661
Cow position: chr6:13848310-13848856 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 355
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 14

Conread position: 123-661
Cow position: chr6:16591213-16591746 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 77

Conread position: 130-299
Cow position: chr6:64790574-64790748 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 136-485
Cow position: chr6:31301575-31301928 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 29

Conread position: 165-638
Cow position: chr6:16598894-16599385 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 197

Conread position: 171-659
Cow position: chr6:5749211-5749712 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 28

Conread position: 172-525
Cow position: chr6:32072452-32072106 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 238
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 16

Conread position: 174-595
Cow position: chr6:6185546-6185964 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 288
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 83, 43

Conread position: 206-661
Cow position: chr6:184219-183754 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 304
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 32

Conread position: 206-662
Cow position: chr6:24240729-24241195 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 327

Conread position: 232-661
Cow position: chr6:36528560-36528987 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 79

Conread position: 242-635
Cow position: chr6:38206663-38207047 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 259
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 78

Conread position: 280-661
Cow position: chr6:69143973-69144355 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 16, 67

Conread position: 284-661
Cow position: chr6:28475138-28475510 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 24

Conread position: 288-661
Cow position: chr6:58028141-58028509 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 247
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 79, 23

Conread position: 288-661
Cow position: chr6:64717742-64718108 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 246
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 43

Conread position: 296-661
Cow position: chr6:17596873-17596506 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 8

Conread position: 312-661
Cow position: chr6:17243854-17243511 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 254
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 27

Conread position: 313-635
Cow position: chr6:16672754-16673068 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 211
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 165, 38

Conread position: 370-661
Cow position: chr6:14390427-14390718 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 108, 153

Conread position: 378-660
Cow position: chr6:17047847-17048129 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 145

Conread position: 433-661
Cow position: chr6:28642977-28642749 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 90

Conread position: 456-659
Cow position: chr6:53543681-53543884 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 66

Show alignments to all cow chromosomes.