Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 1-616
Cow position: chr8:46218357-46217736 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 1-638
Cow position: chr8:2235602-2234936 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 9

Conread position: 1-654
Cow position: chr8:34109258-34109936 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 10

Conread position: 3-215
Cow position: chr8:19331096-19331321 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 170

Conread position: 3-219
Cow position: chr8:19190044-19190249 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 80

Conread position: 3-261
Cow position: chr8:49859382-49859114 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 107

Conread position: 3-262
Cow position: chr8:38605828-38605558 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 34, 109

Conread position: 3-328
Cow position: chr8:46051565-46051916 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 249
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 13

Conread position: 3-444
Cow position: chr8:31984510-31984983 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 110

Conread position: 3-518
Cow position: chr8:19051831-19052377 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 108

Conread position: 3-588
Cow position: chr8:5017563-5018169 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 72

Conread position: 3-607
Cow position: chr8:39194834-39194202 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 21

Conread position: 3-612
Cow position: chr8:37932474-37933111 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 122

Conread position: 3-615
Cow position: chr8:2887132-2887770 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 52

Conread position: 3-650
Cow position: chr8:55085919-55086602 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 51

Conread position: 3-661
Cow position: chr8:1320422-1321083 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-661
Cow position: chr8:1347871-1347184 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 72

Conread position: 3-661
Cow position: chr8:3786020-3786696 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr8:3855643-3854958 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 381

Conread position: 3-661
Cow position: chr8:8400731-8400036 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 445

Conread position: 3-661
Cow position: chr8:8517217-8516533 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 122

Conread position: 3-661
Cow position: chr8:10749740-10750413 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 123

Conread position: 3-661
Cow position: chr8:14927497-14926819 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr8:21157409-21156725 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 369

Conread position: 3-661
Cow position: chr8:22570926-22570238 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-661
Cow position: chr8:23772024-23772699 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 368

Conread position: 3-661
Cow position: chr8:25377365-25378041 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 115

Conread position: 3-661
Cow position: chr8:25523785-25524458 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr8:29008020-29008679 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 102

Conread position: 3-661
Cow position: chr8:32318169-32317488 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 373

Conread position: 3-661
Cow position: chr8:32630653-32629967 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 3-661
Cow position: chr8:33325430-33326117 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 123

Conread position: 3-661
Cow position: chr8:33589761-33590445 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 197

Conread position: 3-661
Cow position: chr8:34349054-34349737 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr8:36635124-36634438 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 575

Conread position: 3-661
Cow position: chr8:37656177-37655489 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr8:47068417-47067754 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 53

Conread position: 3-661
Cow position: chr8:50929733-50929039 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 163

Conread position: 3-661
Cow position: chr8:59261545-59260882 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 116

Conread position: 3-662
Cow position: chr8:47660937-47660254 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 368

Conread position: 4-494
Cow position: chr8:42419044-42418558 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 335
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 11

Conread position: 4-645
Cow position: chr8:11525104-11525737 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 4-661
Cow position: chr8:42485300-42485974 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 205

Conread position: 4-661
Cow position: chr8:60061786-60062475 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 12

Conread position: 5-325
Cow position: chr8:53430422-53430732 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 32, 68

Conread position: 5-461
Cow position: chr8:9964087-9963653 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 5-661
Cow position: chr8:11776006-11776684 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 18

Conread position: 5-661
Cow position: chr8:13491750-13492418 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 409
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 48

Conread position: 12-273
Cow position: chr8:5681667-5681398 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 172

Conread position: 16-524
Cow position: chr8:23135214-23134670 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 95

Conread position: 16-655
Cow position: chr8:30496164-30495534 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 66

Conread position: 16-661
Cow position: chr8:47674240-47674902 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 96

Conread position: 16-662
Cow position: chr8:42656591-42655931 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 221

Conread position: 17-659
Cow position: chr8:11803219-11803875 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 124

Conread position: 17-662
Cow position: chr8:30486982-30486346 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 430
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 73

Conread position: 18-616
Cow position: chr8:45145910-45145285 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 92

Conread position: 18-655
Cow position: chr8:47075557-47076224 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 19-596
Cow position: chr8:7399687-7399119 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 125

Conread position: 20-660
Cow position: chr8:41644273-41643621 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 47

Conread position: 26-435
Cow position: chr8:31251910-31252329 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 172

Conread position: 33-588
Cow position: chr8:7162312-7162888 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 75

Conread position: 34-524
Cow position: chr8:45691595-45691092 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 87

Conread position: 82-661
Cow position: chr8:6726510-6725922 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 20

Conread position: 82-661
Cow position: chr8:14256547-14257146 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 82-662
Cow position: chr8:11565229-11565817 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 20

Conread position: 85-424
Cow position: chr8:32647989-32648323 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 15

Conread position: 93-661
Cow position: chr8:16090341-16090899 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 94

Conread position: 98-662
Cow position: chr8:21584679-21585248 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 108-588
Cow position: chr8:14255679-14256174 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 322
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 45, 7

Conread position: 114-298
Cow position: chr8:20135942-20135750 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 114-661
Cow position: chr8:30155621-30156165 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 18

Conread position: 117-661
Cow position: chr8:11834034-11834592 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 26

Conread position: 119-661
Cow position: chr8:24914798-24914255 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 26

Conread position: 121-661
Cow position: chr8:10742135-10741580 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 242

Conread position: 121-661
Cow position: chr8:18054245-18054794 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 71

Conread position: 121-661
Cow position: chr8:25775147-25774581 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 84

Conread position: 121-661
Cow position: chr8:45794240-45793690 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 241

Conread position: 130-661
Cow position: chr8:3748679-3748135 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 381

Conread position: 130-661
Cow position: chr8:39819973-39820518 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 407

Conread position: 130-662
Cow position: chr8:44700514-44701049 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 133

Conread position: 132-661
Cow position: chr8:14590356-14589811 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 103

Conread position: 133-661
Cow position: chr8:38392152-38392690 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 67

Conread position: 145-661
Cow position: chr8:35470838-35471368 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 392

Conread position: 148-616
Cow position: chr8:9639412-9639906 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 229

Conread position: 195-616
Cow position: chr8:47490074-47490503 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 14, 30

Conread position: 206-661
Cow position: chr8:12313808-12313337 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 305
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 333

Conread position: 232-661
Cow position: chr8:19332198-19332637 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 294
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 26, 303

Conread position: 235-661
Cow position: chr8:49218353-49218808 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 300
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 315

Conread position: 238-660
Cow position: chr8:21250856-21251291 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 24, 298

Conread position: 249-661
Cow position: chr8:51068352-51067931 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 283

Conread position: 294-602
Cow position: chr8:12804478-12804781 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 196
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 184, 40

Conread position: 301-609
Cow position: chr8:44108850-44109157 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 43

Conread position: 305-661
Cow position: chr8:1121093-1121441 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 224
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 173, 20

Conread position: 370-661
Cow position: chr8:9944145-9943860 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 243, 103

Conread position: 370-661
Cow position: chr8:24190741-24191032 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 153

Conread position: 370-661
Cow position: chr8:29923576-29923285 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 34

Conread position: 370-661
Cow position: chr8:46421820-46422111 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 118, 111

Conread position: 403-661
Cow position: chr8:44241883-44241625 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 120

Conread position: 403-661
Cow position: chr8:45158718-45158460 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 33

Conread position: 408-661
Cow position: chr8:32648532-32648775 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 58, 117

Conread position: 409-661
Cow position: chr8:50432330-50432088 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 114

Conread position: 436-661
Cow position: chr8:60920645-60920870 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 87

Show alignments to all cow chromosomes.