Cow genome map

Conread name: Emb1-C0005196_A24

Conread position: 1-485
Cow position: chr9:24980891-24980394 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 327
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 18

Conread position: 1-616
Cow position: chr9:50698336-50698962 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 24

Conread position: 2-445
Cow position: chr9:49303624-49303174 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 128

Conread position: 3-299
Cow position: chr9:60276981-60276669 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 13

Conread position: 3-328
Cow position: chr9:29027177-29026824 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 3-328
Cow position: chr9:47003220-47003560 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 195

Conread position: 3-471
Cow position: chr9:1981307-1981789 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 120

Conread position: 3-484
Cow position: chr9:30435606-30436115 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 3-485
Cow position: chr9:29627723-29627206 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 3-526
Cow position: chr9:32969981-32970528 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 139

Conread position: 3-660
Cow position: chr9:19158505-19157811 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 377

Conread position: 3-661
Cow position: chr9:130130-129477 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr9:779787-779103 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 3-661
Cow position: chr9:2871357-2872050 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 72

Conread position: 3-661
Cow position: chr9:6250333-6251003 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 3-661
Cow position: chr9:7061046-7060347 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-661
Cow position: chr9:18508788-18508110 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 523

Conread position: 3-661
Cow position: chr9:20939353-20940018 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 108

Conread position: 3-661
Cow position: chr9:21410331-21411024 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 555

Conread position: 3-661
Cow position: chr9:28022840-28023518 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 232

Conread position: 3-661
Cow position: chr9:30673409-30674096 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 385

Conread position: 3-661
Cow position: chr9:31065752-31066437 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 122

Conread position: 3-661
Cow position: chr9:31808611-31809295 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 323

Conread position: 3-661
Cow position: chr9:37161778-37161098 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 212

Conread position: 3-661
Cow position: chr9:38677178-38677863 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 109

Conread position: 3-661
Cow position: chr9:42310712-42311410 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 252

Conread position: 3-661
Cow position: chr9:50791747-50792434 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 3-661
Cow position: chr9:51181143-51180461 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 214

Conread position: 3-661
Cow position: chr9:59537132-59537820 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 3-662
Cow position: chr9:47042993-47043680 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 12

Conread position: 4-646
Cow position: chr9:35315845-35315157 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 108

Conread position: 4-661
Cow position: chr9:1250965-1250279 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 4-661
Cow position: chr9:1995355-1994688 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 328

Conread position: 4-661
Cow position: chr9:3936398-3935755 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 89

Conread position: 4-661
Cow position: chr9:46042197-46041533 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 107

Conread position: 4-661
Cow position: chr9:64015612-64014953 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 91

Conread position: 5-358
Cow position: chr9:3167965-3168329 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 25, 40

Conread position: 5-416
Cow position: chr9:39731020-39730593 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 278
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 336

Conread position: 5-419
Cow position: chr9:3963094-3962647 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 29, 390

Conread position: 5-484
Cow position: chr9:3727639-3728129 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 5-616
Cow position: chr9:27935413-27936052 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 120

Conread position: 5-661
Cow position: chr9:59428046-59428715 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 54

Conread position: 10-299
Cow position: chr9:4836300-4835992 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 191

Conread position: 11-661
Cow position: chr9:54925590-54926248 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 44

Conread position: 11-662
Cow position: chr9:5141754-5142414 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 12-662
Cow position: chr9:4283010-4283677 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 317

Conread position: 16-612
Cow position: chr9:13474724-13474102 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 59

Conread position: 16-661
Cow position: chr9:25188147-25188815 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 17-616
Cow position: chr9:4649557-4648973 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 356
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 20, 32

Conread position: 17-661
Cow position: chr9:25034516-25033848 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 95

Conread position: 18-391
Cow position: chr9:59481747-59481349 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 355

Conread position: 18-524
Cow position: chr9:30488643-30489173 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 354
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 216

Conread position: 18-661
Cow position: chr9:3309671-3310332 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 18-661
Cow position: chr9:4942763-4942085 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 18-661
Cow position: chr9:9014133-9014789 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 187

Conread position: 18-661
Cow position: chr9:27783237-27783904 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 94

Conread position: 19-608
Cow position: chr9:37970157-37969545 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 28-661
Cow position: chr9:1075128-1074456 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 82

Conread position: 32-655
Cow position: chr9:20176650-20176000 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 318

Conread position: 33-661
Cow position: chr9:650960-650306 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 219

Conread position: 35-661
Cow position: chr9:25903574-25904240 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 74

Conread position: 36-659
Cow position: chr9:17304907-17304259 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 73

Conread position: 36-659
Cow position: chr9:35595009-35594371 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 73

Conread position: 61-661
Cow position: chr9:2679364-2679991 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 11

Conread position: 82-344
Cow position: chr9:30191260-30190988 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 22

Conread position: 82-661
Cow position: chr9:27036029-27036619 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 379
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 81, 33

Conread position: 91-661
Cow position: chr9:7003862-7004452 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 94-660
Cow position: chr9:2172084-2172657 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 370
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 22

Conread position: 98-655
Cow position: chr9:2212276-2212852 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 257

Conread position: 121-660
Cow position: chr9:5005151-5005704 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 118

Conread position: 130-613
Cow position: chr9:25923784-25923332 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 330
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 335, 46

Conread position: 130-616
Cow position: chr9:50094063-50093565 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 407

Conread position: 156-661
Cow position: chr9:8781708-8781209 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 337
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 20

Conread position: 156-662
Cow position: chr9:4717373-4717883 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 212

Conread position: 185-524
Cow position: chr9:47545430-47545777 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 76, 175

Conread position: 190-661
Cow position: chr9:9707364-9707835 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 23

Conread position: 196-662
Cow position: chr9:9647393-9647861 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 54

Conread position: 206-661
Cow position: chr9:29332502-29332975 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 273

Conread position: 246-661
Cow position: chr9:4308066-4307651 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 285
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 48, 109

Conread position: 303-606
Cow position: chr9:10976473-10976777 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 223

Conread position: 309-657
Cow position: chr9:29789324-29788973 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 43

Conread position: 350-615
Cow position: chr9:3804765-3805020 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 370-655
Cow position: chr9:59509733-59509448 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 107, 160

Conread position: 370-661
Cow position: chr9:56303024-56302733 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 108, 153

Conread position: 375-661
Cow position: chr9:6709391-6709677 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 103, 148

Conread position: 378-662
Cow position: chr9:29044328-29044046 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 17, 155

Conread position: 379-661
Cow position: chr9:29026486-29026206 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 238, 94

Conread position: 403-661
Cow position: chr9:47004192-47004450 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 120

Conread position: 415-661
Cow position: chr9:203821-203575 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 56, 108

Conread position: 415-661
Cow position: chr9:3962376-3962126 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 214

Conread position: 440-656
Cow position: chr9:34769641-34769858 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 83

Show alignments to all cow chromosomes.