Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-160 |
| Cow position: | chr10:42628549-42628711 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-191 |
| Cow position: | chr10:65308012-65308205 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-248 |
| Cow position: | chr10:22842669-22842916 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 1-250 |
| Cow position: | chr10:19840041-19840298 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-254 |
| Cow position: | chr10:60489551-60489803 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 1-298 |
| Cow position: | chr10:28116538-28116242 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 173 |
| Conread position: | 1-310 |
| Cow position: | chr10:54059466-54059150 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 213 |
| Conread position: | 1-332 |
| Cow position: | chr10:276482-276817 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 274 |
| Conread position: | 1-366 |
| Cow position: | chr10:29632972-29632601 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 162 |
| Conread position: | 1-395 |
| Cow position: | chr10:39904815-39905232 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 146 |
| Conread position: | 1-409 |
| Cow position: | chr10:41351866-41351455 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 1-414 |
| Cow position: | chr10:58860787-58860375 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 1-418 |
| Cow position: | chr10:47063306-47063730 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 1-427 |
| Cow position: | chr10:24978242-24977816 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 153 |
| Conread position: | 1-430 |
| Cow position: | chr10:34685784-34686220 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 137 |
| Conread position: | 1-431 |
| Cow position: | chr10:13365962-13365543 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 166 |
| Conread position: | 1-431 |
| Cow position: | chr10:51952717-51952295 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 137 |
| Conread position: | 1-432 |
| Cow position: | chr10:10478255-10477808 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 1-435 |
| Cow position: | chr10:280731-280290 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 1-435 |
| Cow position: | chr10:4192329-4191895 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 192 |
| Conread position: | 1-435 |
| Cow position: | chr10:11685779-11685340 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 1-435 |
| Cow position: | chr10:14803723-14804167 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr10:19496389-19495955 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 66 |
| Conread position: | 1-435 |
| Cow position: | chr10:21400783-21400340 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr10:21740863-21740421 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 245 |
| Conread position: | 1-435 |
| Cow position: | chr10:29696130-29696562 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 1-435 |
| Cow position: | chr10:32578192-32578619 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 167 |
| Conread position: | 1-435 |
| Cow position: | chr10:39817461-39817032 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 1-435 |
| Cow position: | chr10:39854126-39853679 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr10:41566995-41567433 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 266 |
| Conread position: | 1-435 |
| Cow position: | chr10:41876807-41877249 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 306 |
| Conread position: | 1-435 |
| Cow position: | chr10:47906666-47907109 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr10:57559660-57559205 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 278 |
| Conread position: | 1-435 |
| Cow position: | chr10:62778234-62778679 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-460 |
| Cow position: | chr10:62216495-62216959 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 445 |
| Conread position: | 1-466 |
| Cow position: | chr10:25498240-25498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-496 |
| Cow position: | chr10:10415319-10415784 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 49 |
| Conread position: | 1-501 |
| Cow position: | chr10:14859866-14860369 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 170 |
| Conread position: | 1-506 |
| Cow position: | chr10:3543686-3543186 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 1-508 |
| Cow position: | chr10:24298963-24298448 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 1-514 |
| Cow position: | chr10:38847258-38847760 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 1-521 |
| Cow position: | chr10:46191256-46191773 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 111 |
| Conread position: | 1-529 |
| Cow position: | chr10:15862246-15861706 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 160 |
| Conread position: | 2-435 |
| Cow position: | chr10:44294733-44295165 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 3-229 |
| Cow position: | chr10:29846719-29846485 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-343 |
| Cow position: | chr10:42664114-42664428 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 3-361 |
| Cow position: | chr10:19143448-19143081 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 3-401 |
| Cow position: | chr10:38538607-38538196 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-417 |
| Cow position: | chr10:7282792-7282374 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 3-422 |
| Cow position: | chr10:124200-124628 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 3-422 |
| Cow position: | chr10:62408961-62408539 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 3-428 |
| Cow position: | chr10:39041414-39040978 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 3-431 |
| Cow position: | chr10:19511496-19511933 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-431 |
| Cow position: | chr10:21486807-21487242 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 3-431 |
| Cow position: | chr10:22101132-22101557 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 46 |
| Conread position: | 3-431 |
| Cow position: | chr10:37769713-37770148 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 238 |
| Conread position: | 3-431 |
| Cow position: | chr10:38345472-38345035 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 3-465 |
| Cow position: | chr10:8289874-8290337 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 3-465 |
| Cow position: | chr10:32650623-32651092 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 452 |
| Conread position: | 3-498 |
| Cow position: | chr10:1375427-1375932 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 5-431 |
| Cow position: | chr10:25359292-25359726 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 5-431 |
| Cow position: | chr10:57990071-57989667 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 140 |
| Conread position: | 5-435 |
| Cow position: | chr10:25565353-25564927 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 5-604 |
| Cow position: | chr10:38546330-38545733 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 481 |
| Conread position: | 9-435 |
| Cow position: | chr10:41157344-41157778 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 270 |
| Conread position: | 22-413 |
| Cow position: | chr10:46694466-46694067 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 49-431 |
| Cow position: | chr10:2123326-2122935 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 75-502 |
| Cow position: | chr10:34318326-34317894 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 233 |
| Conread position: | 87-304 |
| Cow position: | chr10:54979903-54979683 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 89-465 |
| Cow position: | chr10:40152475-40152096 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 161 |
| Conread position: | 111-361 |
| Cow position: | chr10:55093243-55093496 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 207 |
| Conread position: | 120-424 |
| Cow position: | chr10:41389533-41389225 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 203 |
| Conread position: | 151-356 |
| Cow position: | chr10:28931984-28931774 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 201 |
| Conread position: | 152-532 |
| Cow position: | chr10:33346643-33347029 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 357 |
| Conread position: | 177-492 |
| Cow position: | chr10:8328200-8327876 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 214-604 |
| Cow position: | chr10:42628732-42629120 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 284 |
| Conread position: | 295-597 |
| Cow position: | chr10:54979280-54978978 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 123 |
| Conread position: | 324-432 |
| Cow position: | chr10:68599073-68598965 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 330-429 |
| Cow position: | chr10:42679599-42679698 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-604 |
| Cow position: | chr10:8339168-8339397 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 61, 33 |
Show alignments to all cow chromosomes.