Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-123
Cow position: chr11:17280714-17280593 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 46

Conread position: 1-143
Cow position: chr11:7687446-7687589 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 122

Conread position: 1-188
Cow position: chr11:9736425-9736236 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 35

Conread position: 1-188
Cow position: chr11:77235292-77235482 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 73, 0

Conread position: 1-258
Cow position: chr11:28050260-28050003 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 171
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 71, 95

Conread position: 1-353
Cow position: chr11:10049651-10050006 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 40

Conread position: 1-375
Cow position: chr11:81853096-81852723 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 96

Conread position: 1-388
Cow position: chr11:44860998-44860607 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 124

Conread position: 1-394
Cow position: chr11:30125720-30125335 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 135

Conread position: 1-395
Cow position: chr11:30304772-30305158 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 52

Conread position: 1-407
Cow position: chr11:9157899-9157492 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 254

Conread position: 1-408
Cow position: chr11:14729993-14729581 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 104

Conread position: 1-426
Cow position: chr11:7113128-7113554 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 11

Conread position: 1-428
Cow position: chr11:8262173-8261742 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 55

Conread position: 1-429
Cow position: chr11:28063217-28063639 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 117

Conread position: 1-431
Cow position: chr11:8887623-8887193 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 50

Conread position: 1-431
Cow position: chr11:34020430-34020855 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 171

Conread position: 1-431
Cow position: chr11:37477592-37477154 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 1-435
Cow position: chr11:1496544-1496105 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 129

Conread position: 1-435
Cow position: chr11:3492539-3492980 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:9607048-9606609 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 139

Conread position: 1-435
Cow position: chr11:9659872-9659418 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 1-435
Cow position: chr11:15983150-15983593 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 1-435
Cow position: chr11:17108159-17107717 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:19064723-19064280 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:20921219-20920776 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:25527099-25527527 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 152

Conread position: 1-435
Cow position: chr11:28230222-28229788 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 172

Conread position: 1-435
Cow position: chr11:32450394-32450836 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 1-435
Cow position: chr11:36744654-36744211 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:37492122-37491677 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 139

Conread position: 1-435
Cow position: chr11:45110887-45111338 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 167

Conread position: 1-435
Cow position: chr11:52418915-52419357 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 1-435
Cow position: chr11:53287928-53287487 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 1-435
Cow position: chr11:57628520-57628077 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 1-435
Cow position: chr11:61401513-61401082 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 152

Conread position: 1-435
Cow position: chr11:67450024-67450467 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr11:67847041-67846602 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 161

Conread position: 1-460
Cow position: chr11:21466603-21467067 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 445

Conread position: 1-460
Cow position: chr11:75919945-75920392 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 1-465
Cow position: chr11:85394282-85393815 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 445

Conread position: 1-471
Cow position: chr11:42428866-42429338 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 31

Conread position: 1-477
Cow position: chr11:17220681-17220198 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 53

Conread position: 1-562
Cow position: chr11:8282605-8283171 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 264

Conread position: 2-471
Cow position: chr11:29234120-29233660 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 309
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 41, 35

Conread position: 2-514
Cow position: chr11:33044593-33044072 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 337
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 69, 201

Conread position: 3-417
Cow position: chr11:77728997-77728569 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 130

Conread position: 3-420
Cow position: chr11:19102958-19102532 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-421
Cow position: chr11:12358893-12358470 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-422
Cow position: chr11:28055067-28054644 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 123

Conread position: 3-431
Cow position: chr11:4271341-4270896 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 135

Conread position: 3-431
Cow position: chr11:10846973-10847407 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 317

Conread position: 3-431
Cow position: chr11:23876833-23877267 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 218

Conread position: 3-431
Cow position: chr11:26125402-26124966 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr11:29669100-29668666 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 340

Conread position: 3-431
Cow position: chr11:38835888-38835466 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 260

Conread position: 3-431
Cow position: chr11:41171164-41170727 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr11:43515102-43514665 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr11:44157707-44157288 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 352

Conread position: 3-431
Cow position: chr11:58133898-58134352 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-431
Cow position: chr11:71329173-71329609 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 64

Conread position: 3-431
Cow position: chr11:72110432-72110000 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 3-435
Cow position: chr11:8244236-8244673 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 314

Conread position: 3-435
Cow position: chr11:54209147-54209581 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 250

Conread position: 3-436
Cow position: chr11:4028021-4027593 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 92

Conread position: 3-465
Cow position: chr11:11987649-11988104 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 82

Conread position: 3-465
Cow position: chr11:24392854-24393315 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 4-435
Cow position: chr11:12351534-12351096 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 70

Conread position: 4-435
Cow position: chr11:44230658-44231082 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 100

Conread position: 4-435
Cow position: chr11:63660052-63659619 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 390

Conread position: 8-395
Cow position: chr11:44496062-44495666 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 163

Conread position: 9-435
Cow position: chr11:4041532-4041107 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 61

Conread position: 10-562
Cow position: chr11:10089871-10090441 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 200

Conread position: 12-319
Cow position: chr11:15998432-15998746 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 226

Conread position: 36-465
Cow position: chr11:66726027-66726476 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 129

Conread position: 42-188
Cow position: chr11:46962849-46962705 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 84

Conread position: 54-432
Cow position: chr11:5343638-5343251 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 57-435
Cow position: chr11:37065541-37065149 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 116

Conread position: 62-381
Cow position: chr11:10210371-10210048 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 73-336
Cow position: chr11:32684890-32685154 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 182
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 112, 72

Conread position: 78-435
Cow position: chr11:64045604-64045967 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 93-402
Cow position: chr11:40776921-40776606 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 117-416
Cow position: chr11:75874140-75873833 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 65, 34

Conread position: 175-491
Cow position: chr11:17280585-17280277 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 9

Conread position: 180-436
Cow position: chr11:8519705-8519959 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 140

Conread position: 235-427
Cow position: chr11:4065466-4065268 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 0

Conread position: 242-435
Cow position: chr11:33194778-33194584 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 251-454
Cow position: chr11:9220336-9220130 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 318-435
Cow position: chr11:59369460-59369577 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 327-435
Cow position: chr11:8267681-8267573 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 97
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 343-532
Cow position: chr11:10050589-10050783 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 89, 15

Show alignments to all cow chromosomes.