Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-189 |
| Cow position: | chr13:30237768-30237950 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 1-229 |
| Cow position: | chr13:34868361-34868601 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-246 |
| Cow position: | chr13:2232252-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-334 |
| Cow position: | chr13:5718578-5718902 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 78 |
| Conread position: | 1-362 |
| Cow position: | chr13:30245141-30244772 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 363 |
| Conread position: | 1-421 |
| Cow position: | chr13:2908855-2908428 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 1-431 |
| Cow position: | chr13:50109056-50109493 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 1-435 |
| Cow position: | chr13:2297206-2296776 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 311 |
| Conread position: | 1-435 |
| Cow position: | chr13:4872669-4873111 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 364 |
| Conread position: | 1-435 |
| Cow position: | chr13:17308067-17308510 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr13:30657372-30656942 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 72 |
| Conread position: | 1-435 |
| Cow position: | chr13:31734488-31734050 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 1-435 |
| Cow position: | chr13:31832194-31832632 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 427 |
| Conread position: | 1-435 |
| Cow position: | chr13:32986457-32986022 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 127 |
| Conread position: | 1-435 |
| Cow position: | chr13:33825139-33824700 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 1-435 |
| Cow position: | chr13:34143066-34142623 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 1-435 |
| Cow position: | chr13:34326084-34325640 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 1-435 |
| Cow position: | chr13:49973275-49973719 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr13:56730689-56730252 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 274 |
| Conread position: | 1-435 |
| Cow position: | chr13:62327989-62327549 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 1-460 |
| Cow position: | chr13:34692755-34693221 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 447 |
| Conread position: | 1-471 |
| Cow position: | chr13:33927970-33927519 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 1-472 |
| Cow position: | chr13:3276750-3277224 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 438 |
| Conread position: | 1-506 |
| Cow position: | chr13:34936735-34937259 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 1-603 |
| Cow position: | chr13:20542772-20542177 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 1-604 |
| Cow position: | chr13:54284175-54284777 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 3-280 |
| Cow position: | chr13:30302661-30302943 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 64, 224 |
| Conread position: | 3-391 |
| Cow position: | chr13:23003921-23003527 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 260 |
| Conread position: | 3-394 |
| Cow position: | chr13:33336728-33336349 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 3-417 |
| Cow position: | chr13:6668529-6668106 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 131 |
| Conread position: | 3-431 |
| Cow position: | chr13:1593559-1593124 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-431 |
| Cow position: | chr13:4940681-4941119 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 132 |
| Conread position: | 3-431 |
| Cow position: | chr13:9044105-9044531 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 3-431 |
| Cow position: | chr13:15520919-15520484 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 117 |
| Conread position: | 3-431 |
| Cow position: | chr13:15924788-15924353 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr13:31612741-31612305 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 352 |
| Conread position: | 3-431 |
| Cow position: | chr13:34042770-34042338 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 3-431 |
| Cow position: | chr13:35756835-35757272 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-464 |
| Cow position: | chr13:32738226-32737760 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 235 |
| Conread position: | 3-475 |
| Cow position: | chr13:3654716-3654252 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 248 |
| Conread position: | 5-435 |
| Cow position: | chr13:13324349-13324784 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 5-465 |
| Cow position: | chr13:34187091-34186616 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 361 |
| Conread position: | 24-188 |
| Cow position: | chr13:32544556-32544723 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 49-432 |
| Cow position: | chr13:3567425-3567826 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 70-435 |
| Cow position: | chr13:2389158-2388783 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 79-435 |
| Cow position: | chr13:11764560-11764224 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 182, 51 |
| Conread position: | 82-361 |
| Cow position: | chr13:23410316-23410045 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 109-426 |
| Cow position: | chr13:19220117-19219798 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 113-304 |
| Cow position: | chr13:10114944-10114749 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 180-431 |
| Cow position: | chr13:4178873-4178620 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 220-450 |
| Cow position: | chr13:46732403-46732175 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 235-435 |
| Cow position: | chr13:3058277-3058075 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 235-435 |
| Cow position: | chr13:60466171-60466372 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 276-435 |
| Cow position: | chr13:676751-676911 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 278-450 |
| Cow position: | chr13:34868621-34868792 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 309-604 |
| Cow position: | chr13:15451647-15451359 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 112 |
Show alignments to all cow chromosomes.