Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-229 |
| Cow position: | chr16:52815510-52815279 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-247 |
| Cow position: | chr16:29676182-29675934 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 1-255 |
| Cow position: | chr16:1430351-1430608 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 1-275 |
| Cow position: | chr16:32605951-32606233 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-286 |
| Cow position: | chr16:44388456-44388162 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-303 |
| Cow position: | chr16:16276381-16276074 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 1-306 |
| Cow position: | chr16:5888606-5888902 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 144 |
| Conread position: | 1-316 |
| Cow position: | chr16:4303347-4303031 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 69, 126 |
| Conread position: | 1-339 |
| Cow position: | chr16:40887131-40886791 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 181, 73 |
| Conread position: | 1-365 |
| Cow position: | chr16:11111814-11111447 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 1-377 |
| Cow position: | chr16:5651875-5652243 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 1-400 |
| Cow position: | chr16:42051248-42050857 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 1-424 |
| Cow position: | chr16:5918608-5919037 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-431 |
| Cow position: | chr16:25084746-25085182 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 1-431 |
| Cow position: | chr16:25440742-25441185 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-431 |
| Cow position: | chr16:25458347-25457904 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr16:31871-32303 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 1-435 |
| Cow position: | chr16:5660984-5661415 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 1-435 |
| Cow position: | chr16:6942746-6943197 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr16:7905766-7906184 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 146 |
| Conread position: | 1-435 |
| Cow position: | chr16:10808286-10808715 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1-435 |
| Cow position: | chr16:25187765-25188207 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 317 |
| Conread position: | 1-435 |
| Cow position: | chr16:28171235-28170798 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 1-435 |
| Cow position: | chr16:36282524-36282962 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 1-444 |
| Cow position: | chr16:56551252-56551696 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 1-460 |
| Cow position: | chr16:20255187-20254725 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 1-460 |
| Cow position: | chr16:36362226-36361776 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 1-465 |
| Cow position: | chr16:34529449-34529913 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 119 |
| Conread position: | 1-471 |
| Cow position: | chr16:6549398-6548926 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 1-493 |
| Cow position: | chr16:335422-335914 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 1-555 |
| Cow position: | chr16:49257450-49256896 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 2-260 |
| Cow position: | chr16:18687995-18687736 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 2-454 |
| Cow position: | chr16:47562810-47563275 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 72, 134 |
| Conread position: | 2-513 |
| Cow position: | chr16:31376131-31375631 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 3-415 |
| Cow position: | chr16:10437380-10437788 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 46 |
| Conread position: | 3-415 |
| Cow position: | chr16:40297050-40296633 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 3-422 |
| Cow position: | chr16:15565876-15566296 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 3-431 |
| Cow position: | chr16:407907-407470 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 3-431 |
| Cow position: | chr16:836154-836590 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 145 |
| Conread position: | 3-431 |
| Cow position: | chr16:1568328-1567893 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 199 |
| Conread position: | 3-431 |
| Cow position: | chr16:2239608-2239179 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 88 |
| Conread position: | 3-431 |
| Cow position: | chr16:5483447-5483884 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr16:8816980-8816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 171 |
| Conread position: | 3-431 |
| Cow position: | chr16:10204288-10203869 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 3-431 |
| Cow position: | chr16:12538799-12538364 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 252 |
| Conread position: | 3-431 |
| Cow position: | chr16:14666705-14666268 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-431 |
| Cow position: | chr16:15183928-15184364 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 3-431 |
| Cow position: | chr16:23253378-23252946 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 3-431 |
| Cow position: | chr16:25341094-25341526 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 3-431 |
| Cow position: | chr16:26662873-26663310 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 206 |
| Conread position: | 3-431 |
| Cow position: | chr16:28471970-28471541 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 193 |
| Conread position: | 3-431 |
| Cow position: | chr16:29046146-29046583 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-431 |
| Cow position: | chr16:43898143-43897710 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 206 |
| Conread position: | 3-435 |
| Cow position: | chr16:11052293-11052725 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 71 |
| Conread position: | 3-435 |
| Cow position: | chr16:31592781-31592342 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 379 |
| Conread position: | 3-465 |
| Cow position: | chr16:2411844-2411375 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 208 |
| Conread position: | 3-465 |
| Cow position: | chr16:23982437-23982903 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 4-431 |
| Cow position: | chr16:2728188-2727727 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 165 |
| Conread position: | 4-435 |
| Cow position: | chr16:39820761-39821195 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 126 |
| Conread position: | 5-418 |
| Cow position: | chr16:27734677-27734253 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 5-428 |
| Cow position: | chr16:15491835-15492267 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 5-435 |
| Cow position: | chr16:2484012-2483577 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 5-602 |
| Cow position: | chr16:25157091-25156489 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 165 |
| Conread position: | 15-506 |
| Cow position: | chr16:9929683-9930182 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 39-593 |
| Cow position: | chr16:42740258-42739697 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 61-249 |
| Cow position: | chr16:29032342-29032537 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 73-359 |
| Cow position: | chr16:53269051-53269338 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 73-529 |
| Cow position: | chr16:32935357-32935831 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 98 |
| Conread position: | 109-427 |
| Cow position: | chr16:33611846-33611520 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 116 |
| Conread position: | 111-438 |
| Cow position: | chr16:9777319-9777652 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 121-416 |
| Cow position: | chr16:13002354-13002649 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 158 |
| Conread position: | 121-460 |
| Cow position: | chr16:19713639-19713303 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 119 |
| Conread position: | 155-465 |
| Cow position: | chr16:44966451-44966762 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 177-604 |
| Cow position: | chr16:49235841-49235413 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 201-435 |
| Cow position: | chr16:31831961-31832197 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 204-450 |
| Cow position: | chr16:18500014-18499768 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 235-494 |
| Cow position: | chr16:52815123-52814860 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 248-604 |
| Cow position: | chr16:29033094-29033447 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 248 |
| Conread position: | 301-571 |
| Cow position: | chr16:16273403-16273132 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 309-435 |
| Cow position: | chr16:29675939-29675814 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 314-427 |
| Cow position: | chr16:25153167-25153280 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.