Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-191 |
| Cow position: | chr17:28109786-28109976 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 184 |
| Conread position: | 1-317 |
| Cow position: | chr17:22160616-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-335 |
| Cow position: | chr17:14308602-14308270 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 1-362 |
| Cow position: | chr17:24780748-24781117 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 363 |
| Conread position: | 1-421 |
| Cow position: | chr17:14217324-14216894 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-425 |
| Cow position: | chr17:9653756-9653323 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-431 |
| Cow position: | chr17:4081351-4081767 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 1-431 |
| Cow position: | chr17:27345505-27345937 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 239 |
| Conread position: | 1-432 |
| Cow position: | chr17:1383114-1382674 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-432 |
| Cow position: | chr17:15435491-15435931 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr17:228601-228165 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 158 |
| Conread position: | 1-435 |
| Cow position: | chr17:2248881-2248441 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 140 |
| Conread position: | 1-435 |
| Cow position: | chr17:2261810-2262245 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 1-435 |
| Cow position: | chr17:2287089-2287529 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 1-435 |
| Cow position: | chr17:8208807-8209249 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr17:15143669-15143224 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr17:15157261-15156821 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 298 |
| Conread position: | 1-435 |
| Cow position: | chr17:18185824-18185392 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 1-435 |
| Cow position: | chr17:20088030-20087604 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 1-435 |
| Cow position: | chr17:20666026-20665583 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr17:22429782-22429345 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 115 |
| Conread position: | 1-435 |
| Cow position: | chr17:35591915-35592357 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 1-435 |
| Cow position: | chr17:43988235-43988676 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 272 |
| Conread position: | 1-435 |
| Cow position: | chr17:44853235-44852790 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 410 |
| Conread position: | 1-450 |
| Cow position: | chr17:2173579-2174036 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 165 |
| Conread position: | 1-465 |
| Cow position: | chr17:20183527-20183064 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 251 |
| Conread position: | 1-465 |
| Cow position: | chr17:22131934-22132398 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 245 |
| Conread position: | 1-471 |
| Cow position: | chr17:16889825-16890302 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 1-471 |
| Cow position: | chr17:23857334-23856858 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 445 |
| Conread position: | 1-477 |
| Cow position: | chr17:42264219-42264690 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 52 |
| Conread position: | 1-604 |
| Cow position: | chr17:14325794-14325200 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 2-529 |
| Cow position: | chr17:4295068-4295581 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 133 |
| Conread position: | 3-175 |
| Cow position: | chr17:40804101-40804270 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 3-185 |
| Cow position: | chr17:2579261-2579444 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 3-409 |
| Cow position: | chr17:16859854-16859451 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 315 |
| Conread position: | 3-422 |
| Cow position: | chr17:13857071-13856639 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-431 |
| Cow position: | chr17:3643134-3642697 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 210 |
| Conread position: | 3-431 |
| Cow position: | chr17:13929370-13929807 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr17:14893863-14894292 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 258 |
| Conread position: | 3-431 |
| Cow position: | chr17:18103978-18103546 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 371 |
| Conread position: | 3-431 |
| Cow position: | chr17:25737365-25737802 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-435 |
| Cow position: | chr17:1879794-1880237 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 268 |
| Conread position: | 3-435 |
| Cow position: | chr17:4059810-4060242 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 3-465 |
| Cow position: | chr17:11088022-11087554 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 436 |
| Conread position: | 3-466 |
| Cow position: | chr17:19269664-19269194 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 443 |
| Conread position: | 4-575 |
| Cow position: | chr17:15370780-15371333 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 5-431 |
| Cow position: | chr17:15850102-15850536 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 5-465 |
| Cow position: | chr17:6259549-6260014 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 359 |
| Conread position: | 7-435 |
| Cow position: | chr17:1946684-1947112 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 145 |
| Conread position: | 9-435 |
| Cow position: | chr17:24633662-24634097 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 36-435 |
| Cow position: | chr17:18027022-18026614 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 38-412 |
| Cow position: | chr17:2555860-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 268 |
| Conread position: | 73-323 |
| Cow position: | chr17:12670672-12670423 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 207, 117 |
| Conread position: | 85-424 |
| Cow position: | chr17:16418051-16417706 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 152 |
| Conread position: | 87-225 |
| Cow position: | chr17:1283993-1283856 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 111-368 |
| Cow position: | chr17:18849511-18849774 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 123-465 |
| Cow position: | chr17:2579457-2579786 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 186-431 |
| Cow position: | chr17:40804709-40804956 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 235-471 |
| Cow position: | chr17:1283763-1283529 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 203 |
| Conread position: | 259-435 |
| Cow position: | chr17:43952596-43952420 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-435 |
| Cow position: | chr17:34156109-34156271 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.