Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-243 |
| Cow position: | chr18:44621667-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 1-244 |
| Cow position: | chr18:16660096-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 1-249 |
| Cow position: | chr18:17992654-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 73, 101 |
| Conread position: | 1-260 |
| Cow position: | chr18:35288440-35288713 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 1-280 |
| Cow position: | chr18:29900227-29900500 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 166, 17 |
| Conread position: | 1-335 |
| Cow position: | chr18:43200971-43201305 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 1-418 |
| Cow position: | chr18:16393733-16393312 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 1-432 |
| Cow position: | chr18:51257891-51258331 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 47 |
| Conread position: | 1-432 |
| Cow position: | chr18:51310494-51310931 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 1-432 |
| Cow position: | chr18:55089017-55088577 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 137 |
| Conread position: | 1-435 |
| Cow position: | chr18:1521039-1521496 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 120 |
| Conread position: | 1-435 |
| Cow position: | chr18:2019778-2019336 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 414 |
| Conread position: | 1-435 |
| Cow position: | chr18:19352294-19352733 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 427 |
| Conread position: | 1-435 |
| Cow position: | chr18:22602395-22602838 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr18:33268749-33269176 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 1-435 |
| Cow position: | chr18:33953659-33953224 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 1-435 |
| Cow position: | chr18:35335397-35335830 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 1-435 |
| Cow position: | chr18:39748486-39748928 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 402 |
| Conread position: | 1-435 |
| Cow position: | chr18:43147016-43146575 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr18:47741926-47742369 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr18:48221785-48222229 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 359 |
| Conread position: | 1-435 |
| Cow position: | chr18:51341594-51342037 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr18:51689534-51689975 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 152 |
| Conread position: | 1-435 |
| Cow position: | chr18:53785747-53786188 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 1-460 |
| Cow position: | chr18:23944463-23944003 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 1-460 |
| Cow position: | chr18:32293683-32294130 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 1-460 |
| Cow position: | chr18:33335776-33336234 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 1-465 |
| Cow position: | chr18:16533887-16534356 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 139 |
| Conread position: | 1-471 |
| Cow position: | chr18:6869350-6868875 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 1-538 |
| Cow position: | chr18:2887113-2886564 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 313 |
| Conread position: | 1-597 |
| Cow position: | chr18:54171935-54171348 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 1-604 |
| Cow position: | chr18:29236726-29237332 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 33 |
| Conread position: | 2-435 |
| Cow position: | chr18:33358776-33359216 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 250 |
| Conread position: | 2-435 |
| Cow position: | chr18:54044792-54044372 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 230 |
| Conread position: | 3-131 |
| Cow position: | chr18:32651905-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-188 |
| Cow position: | chr18:27986938-27987125 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 3-431 |
| Cow position: | chr18:14415886-14416322 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 371 |
| Conread position: | 3-431 |
| Cow position: | chr18:16176697-16176271 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 58 |
| Conread position: | 3-431 |
| Cow position: | chr18:28973993-28973556 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr18:37504973-37505410 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 370 |
| Conread position: | 3-431 |
| Cow position: | chr18:41840915-41840478 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 169 |
| Conread position: | 3-431 |
| Cow position: | chr18:51480747-51481186 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-465 |
| Cow position: | chr18:27838393-27837938 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 78 |
| Conread position: | 3-465 |
| Cow position: | chr18:40478293-40478761 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 4-529 |
| Cow position: | chr18:37599616-37599096 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 147 |
| Conread position: | 7-431 |
| Cow position: | chr18:36508247-36508679 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 9-435 |
| Cow position: | chr18:11275187-11274755 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 9-466 |
| Cow position: | chr18:23797565-23798027 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 435 |
| Conread position: | 22-366 |
| Cow position: | chr18:54024420-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 12 |
| Conread position: | 26-422 |
| Cow position: | chr18:14130323-14130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 50-435 |
| Cow position: | chr18:47719626-47719233 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 50-465 |
| Cow position: | chr18:52650888-52651297 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 73-403 |
| Cow position: | chr18:114377-114708 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 79-430 |
| Cow position: | chr18:37598149-37597800 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 101 |
| Conread position: | 99-353 |
| Cow position: | chr18:25350673-25350934 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 102-435 |
| Cow position: | chr18:24040721-24040381 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 111-435 |
| Cow position: | chr18:51463054-51462728 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 113-460 |
| Cow position: | chr18:19539557-19539213 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 269 |
| Conread position: | 121-364 |
| Cow position: | chr18:32652251-32652499 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 141-427 |
| Cow position: | chr18:46877953-46877666 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 186-389 |
| Cow position: | chr18:18089372-18089171 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 187 |
| Conread position: | 242-435 |
| Cow position: | chr18:17992264-17992070 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 282-604 |
| Cow position: | chr18:56462705-56462386 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 209 |
Show alignments to all cow chromosomes.