Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-160
Cow position: chr19:4252446-4252287 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 73, 136

Conread position: 1-188
Cow position: chr19:4532835-4532652 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 73, 119

Conread position: 1-188
Cow position: chr19:32193489-32193680 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 1-243
Cow position: chr19:29209473-29209721 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 151

Conread position: 1-281
Cow position: chr19:20125533-20125803 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 74, 148

Conread position: 1-305
Cow position: chr19:34332-34641 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 275

Conread position: 1-317
Cow position: chr19:30372194-30372511 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 206

Conread position: 1-334
Cow position: chr19:31341618-31341976 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-365
Cow position: chr19:261348-261728 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 132

Conread position: 1-395
Cow position: chr19:350371-349976 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 210

Conread position: 1-398
Cow position: chr19:32244596-32245002 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-400
Cow position: chr19:39688455-39688847 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 1-419
Cow position: chr19:40887734-40887316 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 95

Conread position: 1-432
Cow position: chr19:416565-417012 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 433

Conread position: 1-435
Cow position: chr19:37808-38250 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 254

Conread position: 1-435
Cow position: chr19:772511-772954 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr19:32212158-32211718 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 207

Conread position: 1-435
Cow position: chr19:43143628-43144071 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 211

Conread position: 1-465
Cow position: chr19:39546536-39546993 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 291

Conread position: 1-485
Cow position: chr19:6553525-6554006 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 114

Conread position: 1-507
Cow position: chr19:15953767-15954267 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 50

Conread position: 1-578
Cow position: chr19:32223527-32222949 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 2-192
Cow position: chr19:561592-561401 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 151

Conread position: 2-197
Cow position: chr19:28376444-28376634 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 186, 69

Conread position: 2-435
Cow position: chr19:28593190-28593618 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 277

Conread position: 3-227
Cow position: chr19:27052851-27052623 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 46

Conread position: 3-301
Cow position: chr19:55078660-55078967 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-302
Cow position: chr19:543711-543404 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 3-422
Cow position: chr19:7488227-7488655 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 3-422
Cow position: chr19:28581740-28581317 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 232

Conread position: 3-427
Cow position: chr19:893699-893268 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 238

Conread position: 3-431
Cow position: chr19:203877-204312 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 128

Conread position: 3-431
Cow position: chr19:33873341-33873777 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 153

Conread position: 3-431
Cow position: chr19:33941526-33941961 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 238

Conread position: 3-435
Cow position: chr19:172125-172566 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 3-435
Cow position: chr19:10672392-10671951 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-435
Cow position: chr19:40852516-40852083 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 130

Conread position: 3-455
Cow position: chr19:76327-75893 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 71

Conread position: 4-431
Cow position: chr19:4385400-4385820 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 4-435
Cow position: chr19:7341983-7342423 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 5-427
Cow position: chr19:439727-439310 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 128

Conread position: 5-431
Cow position: chr19:170824-170396 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 158

Conread position: 13-422
Cow position: chr19:32665454-32665867 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 297

Conread position: 18-340
Cow position: chr19:32785682-32785355 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 210
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 186

Conread position: 36-327
Cow position: chr19:32237733-32237440 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 272

Conread position: 85-435
Cow position: chr19:687065-687418 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 26

Conread position: 111-435
Cow position: chr19:52151806-52151475 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 122-415
Cow position: chr19:2274338-2274043 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 28

Conread position: 150-427
Cow position: chr19:7449959-7449682 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 118

Conread position: 150-459
Cow position: chr19:1032141-1032450 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 57

Conread position: 186-503
Cow position: chr19:42248911-42249235 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 88

Conread position: 186-604
Cow position: chr19:352888-352455 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 339

Conread position: 238-435
Cow position: chr19:28376641-28376841 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 239-465
Cow position: chr19:40817545-40817321 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 202

Conread position: 244-435
Cow position: chr19:29209762-29209952 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 291-436
Cow position: chr19:4532418-4532282 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 295-574
Cow position: chr19:163215-162930 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 154, 139

Conread position: 301-604
Cow position: chr19:42906-43208 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 136, 221

Conread position: 306-604
Cow position: chr19:27052622-27052334 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 95

Conread position: 346-471
Cow position: chr19:30372512-30372634 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 91

Conread position: 378-604
Cow position: chr19:137058-136833 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 122

Show alignments to all cow chromosomes.