Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-188 |
| Cow position: | chr21:27708750-27708941 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-241 |
| Cow position: | chr21:26819033-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-246 |
| Cow position: | chr21:3615280-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-259 |
| Cow position: | chr21:2716693-2716428 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 1-278 |
| Cow position: | chr21:34259231-34258957 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 73, 143 |
| Conread position: | 1-300 |
| Cow position: | chr21:2769473-2769165 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 156 |
| Conread position: | 1-339 |
| Cow position: | chr21:33755296-33755636 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 163, 73 |
| Conread position: | 1-364 |
| Cow position: | chr21:4222699-4222333 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 313 |
| Conread position: | 1-383 |
| Cow position: | chr21:3426473-3426864 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-401 |
| Cow position: | chr21:47948097-47948505 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 330 |
| Conread position: | 1-427 |
| Cow position: | chr21:2416224-2416641 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 90 |
| Conread position: | 1-427 |
| Cow position: | chr21:4590002-4589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-427 |
| Cow position: | chr21:37044901-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-432 |
| Cow position: | chr21:11453668-11453228 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr21:1292189-1291760 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 111 |
| Conread position: | 1-435 |
| Cow position: | chr21:2476522-2476110 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 1-435 |
| Cow position: | chr21:2510640-2511082 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 1-435 |
| Cow position: | chr21:2530138-2529697 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 1-435 |
| Cow position: | chr21:4076833-4077268 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 1-435 |
| Cow position: | chr21:4090639-4091080 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr21:4456817-4457257 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 1-435 |
| Cow position: | chr21:7267553-7267106 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 1-435 |
| Cow position: | chr21:11505575-11506027 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr21:12056012-12055570 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 1-435 |
| Cow position: | chr21:13124011-13123575 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 112 |
| Conread position: | 1-435 |
| Cow position: | chr21:26638475-26638034 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr21:35596356-35596797 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 354 |
| Conread position: | 1-456 |
| Cow position: | chr21:2789003-2788545 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 1-460 |
| Cow position: | chr21:34293006-34293467 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 158 |
| Conread position: | 1-600 |
| Cow position: | chr21:9891591-9892206 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 50 |
| Conread position: | 1-601 |
| Cow position: | chr21:2541427-2540813 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 173 |
| Conread position: | 1-604 |
| Cow position: | chr21:359005-359635 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 1-604 |
| Cow position: | chr21:23811864-23812477 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 502 |
| Conread position: | 2-382 |
| Cow position: | chr21:47939470-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 3-269 |
| Cow position: | chr21:33251382-33251656 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-418 |
| Cow position: | chr21:2883758-2883334 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-427 |
| Cow position: | chr21:27282377-27282808 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 276 |
| Conread position: | 3-431 |
| Cow position: | chr21:145909-146349 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 339 |
| Conread position: | 3-431 |
| Cow position: | chr21:3778757-3779193 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 3-431 |
| Cow position: | chr21:10566664-10567095 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 3-431 |
| Cow position: | chr21:30561792-30562229 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr21:30599930-30599499 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 235 |
| Conread position: | 3-465 |
| Cow position: | chr21:10850070-10850536 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 341 |
| Conread position: | 3-465 |
| Cow position: | chr21:31559664-31559197 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 133 |
| Conread position: | 4-428 |
| Cow position: | chr21:2674636-2674188 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 4-435 |
| Cow position: | chr21:39425054-39425494 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 171 |
| Conread position: | 4-604 |
| Cow position: | chr21:4183518-4184104 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 5-435 |
| Cow position: | chr21:6339558-6339997 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 5-435 |
| Cow position: | chr21:46915579-46916019 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 5-465 |
| Cow position: | chr21:8678368-8677899 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 7-431 |
| Cow position: | chr21:48116102-48116528 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 64-420 |
| Cow position: | chr21:40271623-40271261 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 111-460 |
| Cow position: | chr21:3798270-3797919 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 332 |
| Conread position: | 137-431 |
| Cow position: | chr21:1191291-1191590 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 138-432 |
| Cow position: | chr21:2502022-2502318 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 147-429 |
| Cow position: | chr21:4086941-4087227 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 186-507 |
| Cow position: | chr21:445277-445591 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 131, 61 |
| Conread position: | 192-604 |
| Cow position: | chr21:30226206-30226611 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 278 |
| Conread position: | 263-436 |
| Cow position: | chr21:3615570-3615743 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 280-593 |
| Cow position: | chr21:9870022-9870327 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 185 |
| Conread position: | 297-435 |
| Cow position: | chr21:2716425-2716287 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 124 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.