Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-143 |
| Cow position: | chr22:10076936-10076796 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-188 |
| Cow position: | chr22:1285116-1284927 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 155 |
| Conread position: | 1-188 |
| Cow position: | chr22:6985070-6985260 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-285 |
| Cow position: | chr22:37265269-37265561 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-301 |
| Cow position: | chr22:1293681-1293372 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 1-334 |
| Cow position: | chr22:12732029-12731696 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 1-362 |
| Cow position: | chr22:37073361-37073028 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 197, 32 |
| Conread position: | 1-373 |
| Cow position: | chr22:36274625-36275005 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 73, 80 |
| Conread position: | 1-382 |
| Cow position: | chr22:24949645-24950035 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-391 |
| Cow position: | chr22:32485521-32485139 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 75 |
| Conread position: | 1-399 |
| Cow position: | chr22:46635882-46635492 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 48 |
| Conread position: | 1-420 |
| Cow position: | chr22:44353132-44352721 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 66 |
| Conread position: | 1-428 |
| Cow position: | chr22:5233490-5233054 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-429 |
| Cow position: | chr22:15851150-15851571 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 1-432 |
| Cow position: | chr22:1319212-1319652 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-432 |
| Cow position: | chr22:37131465-37131888 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 1-435 |
| Cow position: | chr22:118002-117584 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 1-435 |
| Cow position: | chr22:536916-537359 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr22:1878607-1879051 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 173 |
| Conread position: | 1-435 |
| Cow position: | chr22:3278538-3278098 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 1-435 |
| Cow position: | chr22:10546460-10546903 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 171 |
| Conread position: | 1-435 |
| Cow position: | chr22:16200301-16200732 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 130 |
| Conread position: | 1-435 |
| Cow position: | chr22:27283864-27284289 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 73 |
| Conread position: | 1-435 |
| Cow position: | chr22:27309958-27309515 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-435 |
| Cow position: | chr22:32348163-32347732 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 1-435 |
| Cow position: | chr22:35672540-35672098 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr22:39882360-39881918 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 1-435 |
| Cow position: | chr22:44369805-44369368 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 174 |
| Conread position: | 1-435 |
| Cow position: | chr22:44489702-44490145 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 1-437 |
| Cow position: | chr22:871041-870606 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 1-465 |
| Cow position: | chr22:158087-157621 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 169 |
| Conread position: | 1-465 |
| Cow position: | chr22:5672552-5673022 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 445 |
| Conread position: | 1-465 |
| Cow position: | chr22:36736578-36737044 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 263 |
| Conread position: | 1-497 |
| Cow position: | chr22:7277338-7277842 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 157 |
| Conread position: | 1-511 |
| Cow position: | chr22:5933169-5932668 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 1-519 |
| Cow position: | chr22:1321427-1321930 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 1-551 |
| Cow position: | chr22:11030775-11031337 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 505 |
| Conread position: | 1-558 |
| Cow position: | chr22:44609421-44609969 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 33 |
| Conread position: | 1-604 |
| Cow position: | chr22:3306917-3306303 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 1-604 |
| Cow position: | chr22:8136381-8135778 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 117 |
| Conread position: | 1-604 |
| Cow position: | chr22:13917318-13917933 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 217 |
| Conread position: | 3-419 |
| Cow position: | chr22:33350986-33351423 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 249 |
| Conread position: | 3-422 |
| Cow position: | chr22:36183576-36184001 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 132 |
| Conread position: | 3-431 |
| Cow position: | chr22:560882-560451 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 3-431 |
| Cow position: | chr22:15314131-15313698 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 148 |
| Conread position: | 3-431 |
| Cow position: | chr22:17328922-17328485 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr22:18816564-18816132 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 3-431 |
| Cow position: | chr22:19143882-19143445 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr22:31313158-31313593 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 417 |
| Conread position: | 3-431 |
| Cow position: | chr22:31335216-31334784 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 267 |
| Conread position: | 3-431 |
| Cow position: | chr22:34168149-34168585 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 400 |
| Conread position: | 3-431 |
| Cow position: | chr22:36861713-36861276 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr22:44933797-44934233 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-460 |
| Cow position: | chr22:46853159-46853621 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 330 |
| Conread position: | 3-465 |
| Cow position: | chr22:525859-525408 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 3-465 |
| Cow position: | chr22:21589150-21589610 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 3-465 |
| Cow position: | chr22:39469702-39469237 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 3-466 |
| Cow position: | chr22:42990989-42991459 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 443 |
| Conread position: | 4-316 |
| Cow position: | chr22:27386613-27386292 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 5-429 |
| Cow position: | chr22:34598494-34598912 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 5-604 |
| Cow position: | chr22:1270691-1270121 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 167 |
| Conread position: | 8-435 |
| Cow position: | chr22:327334-326912 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 13-511 |
| Cow position: | chr22:6503837-6503336 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 17-435 |
| Cow position: | chr22:46547833-46547406 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 21-435 |
| Cow position: | chr22:36533902-36533483 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 33-435 |
| Cow position: | chr22:20240994-20240584 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 334 |
| Conread position: | 36-435 |
| Cow position: | chr22:5307954-5308362 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 38-427 |
| Cow position: | chr22:15956838-15956454 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 12 |
| Conread position: | 39-254 |
| Cow position: | chr22:45880255-45880036 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 39-431 |
| Cow position: | chr22:44475108-44475488 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 73-435 |
| Cow position: | chr22:42771365-42771713 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 76 |
| Conread position: | 79-431 |
| Cow position: | chr22:10909942-10909579 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 169 |
| Conread position: | 87-435 |
| Cow position: | chr22:6020566-6020920 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 114-408 |
| Cow position: | chr22:44396382-44396681 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 141-426 |
| Cow position: | chr22:35943250-35942961 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 212 |
| Conread position: | 220-604 |
| Cow position: | chr22:1283608-1283228 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 235-460 |
| Cow position: | chr22:38938026-38937804 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 203 |
| Conread position: | 240-604 |
| Cow position: | chr22:23853393-23853759 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 104 |
| Conread position: | 277-435 |
| Cow position: | chr22:37266073-37266231 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-436 |
| Cow position: | chr22:13773045-13773154 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 337-435 |
| Cow position: | chr22:31936654-31936752 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 342-435 |
| Cow position: | chr22:24950261-24950354 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.