Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-187 |
| Cow position: | chr24:13531632-13531446 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 1-188 |
| Cow position: | chr24:12288825-12288638 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 1-249 |
| Cow position: | chr24:6645316-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-251 |
| Cow position: | chr24:2636021-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 233 |
| Conread position: | 1-256 |
| Cow position: | chr24:7061003-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 1-260 |
| Cow position: | chr24:17187447-17187708 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 1-285 |
| Cow position: | chr24:14390824-14390542 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 1-351 |
| Cow position: | chr24:12161780-12162134 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 155 |
| Conread position: | 1-412 |
| Cow position: | chr24:44017447-44017867 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr24:6025194-6024754 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 299 |
| Conread position: | 1-435 |
| Cow position: | chr24:6083918-6084361 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr24:6434142-6434584 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 260 |
| Conread position: | 1-435 |
| Cow position: | chr24:8030052-8030495 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr24:9188830-9188388 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 384 |
| Conread position: | 1-435 |
| Cow position: | chr24:12114135-12113703 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 1-435 |
| Cow position: | chr24:12236955-12237397 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 427 |
| Conread position: | 1-435 |
| Cow position: | chr24:13188086-13188517 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 329 |
| Conread position: | 1-435 |
| Cow position: | chr24:14584995-14585420 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 1-435 |
| Cow position: | chr24:16084759-16084315 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr24:22793075-22793516 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 1-435 |
| Cow position: | chr24:35838724-35838276 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 353 |
| Conread position: | 1-435 |
| Cow position: | chr24:40548778-40549218 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-465 |
| Cow position: | chr24:9092372-9091914 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 260 |
| Conread position: | 1-466 |
| Cow position: | chr24:6335600-6336060 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 1-489 |
| Cow position: | chr24:6352097-6352583 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 1-602 |
| Cow position: | chr24:16649399-16648808 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 1-604 |
| Cow position: | chr24:12797863-12797257 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 1-604 |
| Cow position: | chr24:36560182-36559581 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 248 |
| Conread position: | 2-435 |
| Cow position: | chr24:6145262-6145712 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 3-382 |
| Cow position: | chr24:22952039-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr24:4415620-4415189 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 3-431 |
| Cow position: | chr24:19833284-19833725 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-435 |
| Cow position: | chr24:12086101-12086542 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 172 |
| Conread position: | 3-435 |
| Cow position: | chr24:14384710-14384271 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 276 |
| Conread position: | 3-524 |
| Cow position: | chr24:36707755-36708279 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 4-414 |
| Cow position: | chr24:15392405-15392017 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 4-419 |
| Cow position: | chr24:16140988-16141395 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 4-432 |
| Cow position: | chr24:12485413-12484976 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 5-304 |
| Cow position: | chr24:38635666-38635967 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 8-338 |
| Cow position: | chr24:12131576-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 65 |
| Conread position: | 9-435 |
| Cow position: | chr24:33739435-33738996 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 342 |
| Conread position: | 17-221 |
| Cow position: | chr24:35987427-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 17-435 |
| Cow position: | chr24:37216921-37217342 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 235 |
| Conread position: | 18-414 |
| Cow position: | chr24:37321683-37321291 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 22-497 |
| Cow position: | chr24:40654315-40654788 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 29-303 |
| Cow position: | chr24:12224540-12224250 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 103-382 |
| Cow position: | chr24:13524126-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 63 |
| Conread position: | 145-431 |
| Cow position: | chr24:29187331-29187623 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 242-428 |
| Cow position: | chr24:7061539-7061726 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 250-435 |
| Cow position: | chr24:5993071-5992885 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 275-494 |
| Cow position: | chr24:16376708-16376926 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 309-501 |
| Cow position: | chr24:6058607-6058797 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 119 |
| Conread position: | 310-435 |
| Cow position: | chr24:43813983-43814108 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-435 |
| Cow position: | chr24:6444517-6444625 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 354-461 |
| Cow position: | chr24:12162118-12162221 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.