Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-188
Cow position: chr28:17330663-17330477 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 48

Conread position: 1-205
Cow position: chr28:15681749-15681951 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 150

Conread position: 1-277
Cow position: chr28:24652151-24652427 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 151

Conread position: 1-295
Cow position: chr28:15950841-15951142 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 119

Conread position: 1-302
Cow position: chr28:7817081-7817373 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 152

Conread position: 1-348
Cow position: chr28:27937589-27937243 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 231
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 55, 39

Conread position: 1-397
Cow position: chr28:15920606-15920200 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-428
Cow position: chr28:24667440-24667874 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 97

Conread position: 1-431
Cow position: chr28:7901211-7901660 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-431
Cow position: chr28:32792519-32792082 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 367

Conread position: 1-435
Cow position: chr28:2591776-2592217 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr28:6780469-6780031 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 131

Conread position: 1-435
Cow position: chr28:7822117-7822560 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr28:13441017-13440574 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr28:14750408-14750849 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 1-435
Cow position: chr28:24587293-24587737 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 1-450
Cow position: chr28:1387535-1387084 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 288

Conread position: 1-458
Cow position: chr28:8721585-8721123 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 18

Conread position: 1-460
Cow position: chr28:9953996-9954456 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 1-465
Cow position: chr28:9155425-9154956 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 334

Conread position: 1-506
Cow position: chr28:10619247-10618740 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 1-604
Cow position: chr28:2989824-2989233 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 33

Conread position: 1-604
Cow position: chr28:5812568-5813153 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 150

Conread position: 1-604
Cow position: chr28:21358874-21359475 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 51

Conread position: 3-131
Cow position: chr28:1168302-1168174 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 31

Conread position: 3-165
Cow position: chr28:15035634-15035470 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 3-174
Cow position: chr28:29819432-29819603 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 168

Conread position: 3-315
Cow position: chr28:26426412-26426099 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 73, 150

Conread position: 3-409
Cow position: chr28:5565723-5566130 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 123

Conread position: 3-409
Cow position: chr28:17667650-17667237 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 14

Conread position: 3-415
Cow position: chr28:22261289-22260868 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 170

Conread position: 3-416
Cow position: chr28:1504717-1505135 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 46

Conread position: 3-427
Cow position: chr28:8378426-8378863 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-428
Cow position: chr28:7001850-7002285 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-428
Cow position: chr28:10582124-10581690 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 222

Conread position: 3-428
Cow position: chr28:18520599-18520164 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr28:2083466-2083894 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 133

Conread position: 3-431
Cow position: chr28:3192929-3192493 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-431
Cow position: chr28:5114938-5114513 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 170

Conread position: 3-431
Cow position: chr28:12150177-12150602 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 67

Conread position: 3-431
Cow position: chr28:12410348-12409927 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 50

Conread position: 3-431
Cow position: chr28:14705810-14705373 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 329

Conread position: 3-431
Cow position: chr28:17388343-17388780 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr28:33252179-33252610 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 93

Conread position: 3-465
Cow position: chr28:1815006-1814537 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 443

Conread position: 3-465
Cow position: chr28:13459833-13460300 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 448

Conread position: 3-465
Cow position: chr28:15378130-15377662 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 323

Conread position: 4-580
Cow position: chr28:7790435-7789836 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 71

Conread position: 5-435
Cow position: chr28:1952994-1953432 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 149

Conread position: 9-422
Cow position: chr28:782263-782684 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 147

Conread position: 10-465
Cow position: chr28:7740362-7740811 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 54

Conread position: 12-436
Cow position: chr28:9137178-9136748 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 296

Conread position: 22-495
Cow position: chr28:34648823-34649312 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 84

Conread position: 32-228
Cow position: chr28:22233798-22233595 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 39-435
Cow position: chr28:2724993-2724590 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 375

Conread position: 87-460
Cow position: chr28:4380890-4380521 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 103

Conread position: 111-428
Cow position: chr28:22065764-22065448 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 236

Conread position: 114-431
Cow position: chr28:5751730-5751407 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 5

Conread position: 121-428
Cow position: chr28:1167899-1167586 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 85

Conread position: 121-431
Cow position: chr28:34593961-34594277 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 177-604
Cow position: chr28:5797475-5797901 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 67

Conread position: 180-422
Cow position: chr28:1931939-1931695 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 182-460
Cow position: chr28:17324303-17324021 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 180

Conread position: 217-435
Cow position: chr28:485479-485260 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 238-431
Cow position: chr28:22233293-22233101 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 156
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 43, 81

Conread position: 238-604
Cow position: chr28:10071089-10071448 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 64

Conread position: 263-460
Cow position: chr28:13490280-13490474 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 175

Conread position: 271-444
Cow position: chr28:6539124-6538950 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 146
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 0

Conread position: 307-435
Cow position: chr28:24652942-24652814 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 115
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 327-530
Cow position: chr28:11357519-11357313 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 159

Conread position: 352-470
Cow position: chr28:2886525-2886639 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 371-603
Cow position: chr28:7817377-7817616 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 135

Conread position: 386-590
Cow position: chr28:5764500-5764706 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 45, 105

Show alignments to all cow chromosomes.