Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-249
Cow position: chr29:21427229-21426974 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 208

Conread position: 1-256
Cow position: chr29:31180949-31181212 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 1-327
Cow position: chr29:16109555-16109887 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 49

Conread position: 1-331
Cow position: chr29:13853195-13852861 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 16

Conread position: 1-382
Cow position: chr29:32315866-32316256 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-418
Cow position: chr29:17662749-17663155 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 166

Conread position: 1-430
Cow position: chr29:10848285-10847825 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-431
Cow position: chr29:19884895-19885334 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 1-432
Cow position: chr29:7840622-7841061 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 307

Conread position: 1-432
Cow position: chr29:15895025-15894585 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 1-435
Cow position: chr29:610786-610344 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 84

Conread position: 1-435
Cow position: chr29:16769958-16770391 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 1-435
Cow position: chr29:27250509-27250074 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 1-435
Cow position: chr29:35296700-35297142 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 1-436
Cow position: chr29:43366171-43365733 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 102

Conread position: 1-448
Cow position: chr29:2750566-2750135 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 48

Conread position: 1-460
Cow position: chr29:11049108-11049567 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 122

Conread position: 1-460
Cow position: chr29:21543540-21543080 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 261

Conread position: 1-460
Cow position: chr29:27040938-27040483 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 147

Conread position: 1-460
Cow position: chr29:35196499-35196953 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 1-487
Cow position: chr29:30811358-30811849 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 33

Conread position: 1-560
Cow position: chr29:15950358-15949798 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 3-272
Cow position: chr29:21246397-21246674 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 3-428
Cow position: chr29:10648420-10647990 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 61

Conread position: 3-428
Cow position: chr29:39079878-39079451 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-431
Cow position: chr29:2099672-2100109 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr29:2689730-2690164 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 314

Conread position: 3-431
Cow position: chr29:2841541-2841109 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 239

Conread position: 3-431
Cow position: chr29:6266666-6266237 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 170

Conread position: 3-431
Cow position: chr29:7431388-7430955 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 351

Conread position: 3-431
Cow position: chr29:10824128-10823705 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 169

Conread position: 3-431
Cow position: chr29:16022357-16022794 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-431
Cow position: chr29:19652936-19653372 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 99

Conread position: 3-431
Cow position: chr29:25932716-25932280 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 55

Conread position: 3-431
Cow position: chr29:26164995-26164558 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr29:32539638-32540074 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 3-431
Cow position: chr29:34799982-34799543 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-431
Cow position: chr29:38226829-38227244 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 102

Conread position: 3-431
Cow position: chr29:40503151-40502718 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 135

Conread position: 3-431
Cow position: chr29:45459544-45459980 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 3-435
Cow position: chr29:43322387-43322823 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 307

Conread position: 3-464
Cow position: chr29:20250987-20251454 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 325

Conread position: 3-465
Cow position: chr29:48648-48184 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 134

Conread position: 3-465
Cow position: chr29:5957430-5957899 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 132

Conread position: 3-465
Cow position: chr29:19623419-19622951 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 99

Conread position: 3-465
Cow position: chr29:23975664-23976136 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 446

Conread position: 4-284
Cow position: chr29:28060837-28060548 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 5-511
Cow position: chr29:104403-104911 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 132

Conread position: 8-428
Cow position: chr29:27981085-27980658 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 391

Conread position: 8-435
Cow position: chr29:18857109-18856676 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 9-322
Cow position: chr29:15969317-15968996 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 21-254
Cow position: chr29:5983334-5983094 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 53, 115

Conread position: 28-188
Cow position: chr29:43791033-43791195 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 145

Conread position: 28-431
Cow position: chr29:14585780-14586186 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 200

Conread position: 43-435
Cow position: chr29:670189-669789 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 231

Conread position: 51-431
Cow position: chr29:45587470-45587096 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 121

Conread position: 87-394
Cow position: chr29:44468185-44468483 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 107, 60

Conread position: 95-435
Cow position: chr29:2466414-2466066 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 37

Conread position: 110-435
Cow position: chr29:9643821-9643488 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 142

Conread position: 150-465
Cow position: chr29:410548-410229 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 289

Conread position: 153-460
Cow position: chr29:12796385-12796093 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 37, 218

Conread position: 244-435
Cow position: chr29:31181492-31181683 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 156
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 27

Conread position: 302-604
Cow position: chr29:14086313-14086015 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 137, 42

Conread position: 306-602
Cow position: chr29:5983070-5982774 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 21, 169

Conread position: 363-565
Cow position: chr29:8331136-8330939 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 93, 76

Show alignments to all cow chromosomes.