Cow genome map
Conread name: | Emb1-C0005196_O14 |
Conread position: | 1-249 |
Cow position: | chr29:21427229-21426974 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 192 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 73, 208 |
Conread position: | 1-256 |
Cow position: | chr29:31180949-31181212 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 184 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 1-327 |
Cow position: | chr29:16109555-16109887 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 49 |
Conread position: | 1-331 |
Cow position: | chr29:13853195-13852861 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 16 |
Conread position: | 1-382 |
Cow position: | chr29:32315866-32316256 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 1-418 |
Cow position: | chr29:17662749-17663155 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 166 |
Conread position: | 1-430 |
Cow position: | chr29:10848285-10847825 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 1-431 |
Cow position: | chr29:19884895-19885334 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 1-432 |
Cow position: | chr29:7840622-7841061 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 307 |
Conread position: | 1-432 |
Cow position: | chr29:15895025-15894585 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 0 |
Conread position: | 1-435 |
Cow position: | chr29:610786-610344 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 84 |
Conread position: | 1-435 |
Cow position: | chr29:16769958-16770391 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 48 |
Conread position: | 1-435 |
Cow position: | chr29:27250509-27250074 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 278 |
Conread position: | 1-435 |
Cow position: | chr29:35296700-35297142 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 155 |
Conread position: | 1-436 |
Cow position: | chr29:43366171-43365733 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 102 |
Conread position: | 1-448 |
Cow position: | chr29:2750566-2750135 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 48 |
Conread position: | 1-460 |
Cow position: | chr29:11049108-11049567 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 122 |
Conread position: | 1-460 |
Cow position: | chr29:21543540-21543080 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 261 |
Conread position: | 1-460 |
Cow position: | chr29:27040938-27040483 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 147 |
Conread position: | 1-460 |
Cow position: | chr29:35196499-35196953 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 18 |
Conread position: | 1-487 |
Cow position: | chr29:30811358-30811849 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 33 |
Conread position: | 1-560 |
Cow position: | chr29:15950358-15949798 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 52 |
Conread position: | 3-272 |
Cow position: | chr29:21246397-21246674 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 201 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 3-428 |
Cow position: | chr29:10648420-10647990 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 61 |
Conread position: | 3-428 |
Cow position: | chr29:39079878-39079451 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 150 |
Conread position: | 3-431 |
Cow position: | chr29:2099672-2100109 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 3-431 |
Cow position: | chr29:2689730-2690164 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 314 |
Conread position: | 3-431 |
Cow position: | chr29:2841541-2841109 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 239 |
Conread position: | 3-431 |
Cow position: | chr29:6266666-6266237 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 170 |
Conread position: | 3-431 |
Cow position: | chr29:7431388-7430955 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 351 |
Conread position: | 3-431 |
Cow position: | chr29:10824128-10823705 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 169 |
Conread position: | 3-431 |
Cow position: | chr29:16022357-16022794 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 3-431 |
Cow position: | chr29:19652936-19653372 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 99 |
Conread position: | 3-431 |
Cow position: | chr29:25932716-25932280 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 55 |
Conread position: | 3-431 |
Cow position: | chr29:26164995-26164558 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 3-431 |
Cow position: | chr29:32539638-32540074 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 258 |
Conread position: | 3-431 |
Cow position: | chr29:34799982-34799543 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 3-431 |
Cow position: | chr29:38226829-38227244 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 102 |
Conread position: | 3-431 |
Cow position: | chr29:40503151-40502718 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 135 |
Conread position: | 3-431 |
Cow position: | chr29:45459544-45459980 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 53 |
Conread position: | 3-435 |
Cow position: | chr29:43322387-43322823 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 307 |
Conread position: | 3-464 |
Cow position: | chr29:20250987-20251454 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 325 |
Conread position: | 3-465 |
Cow position: | chr29:48648-48184 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 134 |
Conread position: | 3-465 |
Cow position: | chr29:5957430-5957899 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 132 |
Conread position: | 3-465 |
Cow position: | chr29:19623419-19622951 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 99 |
Conread position: | 3-465 |
Cow position: | chr29:23975664-23976136 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 446 |
Conread position: | 4-284 |
Cow position: | chr29:28060837-28060548 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 0 |
Conread position: | 5-511 |
Cow position: | chr29:104403-104911 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 132 |
Conread position: | 8-428 |
Cow position: | chr29:27981085-27980658 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 391 |
Conread position: | 8-435 |
Cow position: | chr29:18857109-18856676 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 0 |
Conread position: | 9-322 |
Cow position: | chr29:15969317-15968996 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 21-254 |
Cow position: | chr29:5983334-5983094 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 180 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 53, 115 |
Conread position: | 28-188 |
Cow position: | chr29:43791033-43791195 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 120 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 46, 145 |
Conread position: | 28-431 |
Cow position: | chr29:14585780-14586186 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 200 |
Conread position: | 43-435 |
Cow position: | chr29:670189-669789 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 231 |
Conread position: | 51-431 |
Cow position: | chr29:45587470-45587096 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 121 |
Conread position: | 87-394 |
Cow position: | chr29:44468185-44468483 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 204 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 107, 60 |
Conread position: | 95-435 |
Cow position: | chr29:2466414-2466066 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 37 |
Conread position: | 110-435 |
Cow position: | chr29:9643821-9643488 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 142 |
Conread position: | 150-465 |
Cow position: | chr29:410548-410229 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 289 |
Conread position: | 153-460 |
Cow position: | chr29:12796385-12796093 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 228 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 37, 218 |
Conread position: | 244-435 |
Cow position: | chr29:31181492-31181683 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 156 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 48, 27 |
Conread position: | 302-604 |
Cow position: | chr29:14086313-14086015 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 217 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 137, 42 |
Conread position: | 306-602 |
Cow position: | chr29:5983070-5982774 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 219 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 21, 169 |
Conread position: | 363-565 |
Cow position: | chr29:8331136-8330939 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 151 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 93, 76 |
Show alignments to all cow chromosomes.