Cow genome map
| Conread name: | Emb1-C0005196_O14 |
| Conread position: | 1-147 |
| Cow position: | chr4:12607957-12607808 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 1-151 |
| Cow position: | chr4:10408329-10408482 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-269 |
| Cow position: | chr4:1371466-1371180 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-343 |
| Cow position: | chr4:6215004-6214660 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 1-411 |
| Cow position: | chr4:528541-528960 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-424 |
| Cow position: | chr4:6269080-6268650 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 380 |
| Conread position: | 1-431 |
| Cow position: | chr4:27332991-27333422 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 281 |
| Conread position: | 1-431 |
| Cow position: | chr4:32211715-32212154 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-431 |
| Cow position: | chr4:47718059-47717620 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 304 |
| Conread position: | 1-432 |
| Cow position: | chr4:47764622-47764183 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 173 |
| Conread position: | 1-435 |
| Cow position: | chr4:101381-100942 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 1-435 |
| Cow position: | chr4:158063-158506 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:602542-602984 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:1931072-1930633 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 1-435 |
| Cow position: | chr4:3125329-3125786 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 1-435 |
| Cow position: | chr4:5879719-5880156 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 115 |
| Conread position: | 1-435 |
| Cow position: | chr4:11618409-11618841 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 1-435 |
| Cow position: | chr4:13547576-13548020 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:16056152-16056592 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 161 |
| Conread position: | 1-435 |
| Cow position: | chr4:18424972-18424534 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:30307906-30307468 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 1-435 |
| Cow position: | chr4:65223986-65223543 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:66179440-66178997 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-435 |
| Cow position: | chr4:66925553-66925988 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 118 |
| Conread position: | 1-472 |
| Cow position: | chr4:1497204-1496728 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 107 |
| Conread position: | 1-499 |
| Cow position: | chr4:34185315-34184828 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 1-529 |
| Cow position: | chr4:8598590-8598071 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 49 |
| Conread position: | 1-604 |
| Cow position: | chr4:1464380-1463777 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 362 |
| Conread position: | 1-604 |
| Cow position: | chr4:21338440-21337850 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 1-604 |
| Cow position: | chr4:28830588-28831185 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 1-604 |
| Cow position: | chr4:46663750-46664341 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 45 |
| Conread position: | 2-392 |
| Cow position: | chr4:3830031-3830423 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 2-424 |
| Cow position: | chr4:9101891-9102316 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 361 |
| Conread position: | 3-210 |
| Cow position: | chr4:1050070-1049859 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-257 |
| Cow position: | chr4:31668864-31669122 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 3-302 |
| Cow position: | chr4:33493362-33493666 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 146 |
| Conread position: | 3-388 |
| Cow position: | chr4:4905704-4906090 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 3-415 |
| Cow position: | chr4:29532164-29531744 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 276 |
| Conread position: | 3-422 |
| Cow position: | chr4:3961142-3961569 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-427 |
| Cow position: | chr4:48025952-48026379 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 3-428 |
| Cow position: | chr4:18516446-18516880 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-431 |
| Cow position: | chr4:355461-355896 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 3-431 |
| Cow position: | chr4:6490796-6490378 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 142 |
| Conread position: | 3-431 |
| Cow position: | chr4:16359437-16359870 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 3-431 |
| Cow position: | chr4:17926704-17926268 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 115 |
| Conread position: | 3-431 |
| Cow position: | chr4:24445649-24445220 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 3-431 |
| Cow position: | chr4:26887293-26886878 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 133 |
| Conread position: | 3-431 |
| Cow position: | chr4:36895924-36896354 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 3-431 |
| Cow position: | chr4:41330991-41331425 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 3-431 |
| Cow position: | chr4:43320086-43319660 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 3-431 |
| Cow position: | chr4:43880659-43881095 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-431 |
| Cow position: | chr4:44724633-44725070 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-431 |
| Cow position: | chr4:45049749-45049312 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 376 |
| Conread position: | 3-431 |
| Cow position: | chr4:57979181-57979614 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 368 |
| Conread position: | 3-435 |
| Cow position: | chr4:25600062-25599629 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 3-465 |
| Cow position: | chr4:13492126-13492597 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 315 |
| Conread position: | 3-465 |
| Cow position: | chr4:33073547-33073090 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 135 |
| Conread position: | 4-427 |
| Cow position: | chr4:40824694-40824270 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 70, 146 |
| Conread position: | 4-431 |
| Cow position: | chr4:12241668-12241231 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 18-497 |
| Cow position: | chr4:30283228-30283701 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 28-604 |
| Cow position: | chr4:60264984-60264407 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 41-422 |
| Cow position: | chr4:41119600-41119991 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 122-435 |
| Cow position: | chr4:61256568-61256882 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 204-487 |
| Cow position: | chr4:11384717-11385004 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 238-456 |
| Cow position: | chr4:51044131-51043922 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 248-431 |
| Cow position: | chr4:4415885-4416069 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 253-431 |
| Cow position: | chr4:10408485-10408660 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 288-435 |
| Cow position: | chr4:41954317-41954465 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 127 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 293-435 |
| Cow position: | chr4:18190255-18190396 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.