Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-223
Cow position: chr5:27569793-27570027 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 1-242
Cow position: chr5:23227901-23228147 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 52

Conread position: 1-244
Cow position: chr5:10844232-10843981 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 1-247
Cow position: chr5:7811909-7811659 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 100

Conread position: 1-267
Cow position: chr5:46005741-46005460 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 73, 0

Conread position: 1-273
Cow position: chr5:53714896-53715176 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 73, 0

Conread position: 1-280
Cow position: chr5:27683127-27682843 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 135

Conread position: 1-317
Cow position: chr5:57366379-57366057 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 246

Conread position: 1-328
Cow position: chr5:25207099-25206762 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 236

Conread position: 1-334
Cow position: chr5:4088447-4088789 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-340
Cow position: chr5:18665604-18665951 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 317

Conread position: 1-399
Cow position: chr5:61273537-61273138 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 266

Conread position: 1-413
Cow position: chr5:31101954-31101548 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 127

Conread position: 1-417
Cow position: chr5:24329941-24330341 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 109

Conread position: 1-417
Cow position: chr5:26090183-26089765 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 51

Conread position: 1-428
Cow position: chr5:14659447-14659024 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 39

Conread position: 1-431
Cow position: chr5:10776610-10776183 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 38

Conread position: 1-432
Cow position: chr5:29042154-29042593 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:2530913-2531356 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:3964113-3964537 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 172

Conread position: 1-435
Cow position: chr5:4019556-4019113 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:6589379-6588935 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:9686771-9686342 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 73

Conread position: 1-435
Cow position: chr5:26079576-26079133 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:26769453-26769889 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 324

Conread position: 1-435
Cow position: chr5:27909628-27909187 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:28031127-28031562 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 1-435
Cow position: chr5:29009002-29009438 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 139

Conread position: 1-435
Cow position: chr5:32945523-32945959 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 55

Conread position: 1-435
Cow position: chr5:34202589-34203020 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 47

Conread position: 1-435
Cow position: chr5:39165155-39164715 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 160

Conread position: 1-435
Cow position: chr5:41551282-41550841 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 73

Conread position: 1-435
Cow position: chr5:44459125-44459568 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:45182467-45182018 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:45699927-45700351 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 33

Conread position: 1-435
Cow position: chr5:46644343-46644772 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 49

Conread position: 1-435
Cow position: chr5:47831462-47831028 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 219

Conread position: 1-435
Cow position: chr5:48468634-48468194 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr5:54932575-54932133 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 152

Conread position: 1-435
Cow position: chr5:58195645-58196087 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 1-435
Cow position: chr5:59060263-59060703 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 270

Conread position: 1-435
Cow position: chr5:59481897-59482338 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 1-444
Cow position: chr5:24576556-24577009 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-457
Cow position: chr5:41962592-41962126 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 47

Conread position: 1-465
Cow position: chr5:14379805-14380274 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 398

Conread position: 1-465
Cow position: chr5:28006848-28007302 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 52

Conread position: 1-465
Cow position: chr5:32733602-32733137 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 51

Conread position: 1-467
Cow position: chr5:32674099-32673620 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 21

Conread position: 1-477
Cow position: chr5:49181916-49182393 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 38

Conread position: 1-503
Cow position: chr5:41529929-41529430 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 151

Conread position: 1-503
Cow position: chr5:51162558-51163062 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 38

Conread position: 2-495
Cow position: chr5:25001004-25000499 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 32

Conread position: 3-252
Cow position: chr5:34696229-34696484 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 71, 132

Conread position: 3-393
Cow position: chr5:1342149-1341755 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 315

Conread position: 3-396
Cow position: chr5:6158552-6158152 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 214

Conread position: 3-400
Cow position: chr5:3504602-3504200 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 35

Conread position: 3-422
Cow position: chr5:64782372-64781946 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-427
Cow position: chr5:2430488-2430055 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-428
Cow position: chr5:46738940-46738507 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr5:416078-415641 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr5:2914095-2914529 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 371

Conread position: 3-431
Cow position: chr5:3785453-3785866 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 46

Conread position: 3-431
Cow position: chr5:4068635-4069069 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 36

Conread position: 3-431
Cow position: chr5:10918442-10918876 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 420

Conread position: 3-431
Cow position: chr5:24098293-24098730 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr5:37731990-37732427 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr5:48809071-48808634 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr5:49518308-49518739 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 61

Conread position: 3-431
Cow position: chr5:55627646-55628067 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 35

Conread position: 3-431
Cow position: chr5:57482902-57482465 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 3-435
Cow position: chr5:49119637-49119196 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 209

Conread position: 3-459
Cow position: chr5:30578967-30579432 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 129

Conread position: 3-465
Cow position: chr5:7273506-7273941 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 71

Conread position: 4-193
Cow position: chr5:4384872-4385063 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 69

Conread position: 4-435
Cow position: chr5:31706220-31706659 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 276

Conread position: 4-435
Cow position: chr5:32772127-32772567 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 4-435
Cow position: chr5:46775734-46776165 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 66

Conread position: 5-604
Cow position: chr5:49593810-49593199 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 93

Conread position: 8-409
Cow position: chr5:61020199-61019790 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 280
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 66, 89

Conread position: 9-431
Cow position: chr5:46663649-46664084 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 11-604
Cow position: chr5:46659384-46659971 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 118

Conread position: 14-485
Cow position: chr5:26069058-26068587 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 138

Conread position: 21-424
Cow position: chr5:14346711-14346305 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 273
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 18

Conread position: 36-358
Cow position: chr5:58819957-58819626 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 54-348
Cow position: chr5:5318061-5317759 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 108-460
Cow position: chr5:20972280-20971940 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 177

Conread position: 115-304
Cow position: chr5:52805126-52805320 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 72, 91

Conread position: 126-387
Cow position: chr5:5786829-5786570 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 43

Conread position: 134-496
Cow position: chr5:31202839-31202474 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 250
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 53, 36

Conread position: 238-460
Cow position: chr5:27570000-27570217 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 25

Conread position: 309-435
Cow position: chr5:18665953-18666079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 108
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 311-460
Cow position: chr5:6611972-6612117 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 126
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 126, 0

Conread position: 316-435
Cow position: chr5:18122502-18122383 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 332-435
Cow position: chr5:35299835-35299938 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 93
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.