Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-128
Cow position: chr6:65007622-65007748 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 110

Conread position: 1-144
Cow position: chr6:6476669-6476524 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 60

Conread position: 1-144
Cow position: chr6:49520614-49520469 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 73, 17

Conread position: 1-172
Cow position: chr6:13978307-13978479 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 73, 107

Conread position: 1-280
Cow position: chr6:68362535-68362251 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 73, 240

Conread position: 1-285
Cow position: chr6:42723140-42722851 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 73, 103

Conread position: 1-343
Cow position: chr6:39161984-39162320 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 228
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 84

Conread position: 1-364
Cow position: chr6:57870219-57869847 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 1-366
Cow position: chr6:42927169-42927540 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 145

Conread position: 1-389
Cow position: chr6:48368178-48368556 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 73, 218

Conread position: 1-396
Cow position: chr6:28474492-28474890 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 172, 28

Conread position: 1-416
Cow position: chr6:66231590-66232003 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 21

Conread position: 1-417
Cow position: chr6:11277916-11277488 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 247

Conread position: 1-427
Cow position: chr6:28063122-28063555 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 294

Conread position: 1-427
Cow position: chr6:35433328-35433749 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 284
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 74, 149

Conread position: 1-427
Cow position: chr6:37642185-37642600 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 290
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 73, 96

Conread position: 1-431
Cow position: chr6:13103843-13104281 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 1-435
Cow position: chr6:331681-331242 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 35

Conread position: 1-435
Cow position: chr6:1405452-1405011 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 119

Conread position: 1-435
Cow position: chr6:2554492-2554933 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr6:10558871-10558433 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 33

Conread position: 1-435
Cow position: chr6:13846832-13847259 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 176

Conread position: 1-435
Cow position: chr6:13943696-13944136 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 49

Conread position: 1-435
Cow position: chr6:16051671-16052107 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 104

Conread position: 1-435
Cow position: chr6:17598495-17598052 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr6:26671079-26670631 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 254

Conread position: 1-435
Cow position: chr6:27169361-27169808 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 96

Conread position: 1-435
Cow position: chr6:28491729-28491287 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 237

Conread position: 1-435
Cow position: chr6:43617501-43617942 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 1-435
Cow position: chr6:44028832-44029266 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 396

Conread position: 1-435
Cow position: chr6:44150773-44150329 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr6:59919494-59919058 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 287

Conread position: 1-435
Cow position: chr6:65927721-65928163 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 253

Conread position: 1-435
Cow position: chr6:68026566-68027019 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-444
Cow position: chr6:41552806-41553246 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 193

Conread position: 1-460
Cow position: chr6:19453707-19454163 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 231

Conread position: 1-460
Cow position: chr6:33388618-33389090 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 453

Conread position: 1-465
Cow position: chr6:13276587-13277055 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 226

Conread position: 1-465
Cow position: chr6:30478876-30479353 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 452

Conread position: 1-465
Cow position: chr6:33459649-33460117 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 1-495
Cow position: chr6:32330993-32330502 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 52

Conread position: 1-529
Cow position: chr6:35420795-35420287 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 8

Conread position: 1-604
Cow position: chr6:37115923-37116532 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 212

Conread position: 1-604
Cow position: chr6:38232060-38232674 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 269

Conread position: 2-175
Cow position: chr6:65909212-65909384 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 102

Conread position: 2-257
Cow position: chr6:2886008-2886256 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 185, 71

Conread position: 2-422
Cow position: chr6:13317700-13317284 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 242

Conread position: 2-431
Cow position: chr6:20561324-20560889 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 2-437
Cow position: chr6:11402838-11403272 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 286
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 86, 72

Conread position: 3-156
Cow position: chr6:47043645-47043489 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 3-169
Cow position: chr6:39437427-39437596 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 3-188
Cow position: chr6:1823463-1823277 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 68, 117

Conread position: 3-260
Cow position: chr6:50497672-50497407 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 3-268
Cow position: chr6:10640915-10641185 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 71, 15

Conread position: 3-382
Cow position: chr6:21971460-21971860 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-409
Cow position: chr6:5951450-5951045 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-428
Cow position: chr6:36525829-36526266 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr6:701740-702173 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 378

Conread position: 3-431
Cow position: chr6:913415-913876 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 3-431
Cow position: chr6:3278164-3277727 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr6:3488614-3488176 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 353

Conread position: 3-431
Cow position: chr6:8201519-8201960 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 205

Conread position: 3-431
Cow position: chr6:8761514-8761082 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-431
Cow position: chr6:27469041-27469470 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 3-431
Cow position: chr6:27530216-27529784 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 88

Conread position: 3-431
Cow position: chr6:29311277-29311714 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr6:34893223-34892783 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 170

Conread position: 3-431
Cow position: chr6:35876932-35876495 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr6:40554806-40554364 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 368

Conread position: 3-431
Cow position: chr6:55544540-55544104 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 129

Conread position: 3-465
Cow position: chr6:6566399-6566859 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 32

Conread position: 3-465
Cow position: chr6:15141389-15140925 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 171

Conread position: 3-465
Cow position: chr6:15280755-15280297 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 36

Conread position: 3-465
Cow position: chr6:30275392-30274924 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 405

Conread position: 3-465
Cow position: chr6:65841381-65841842 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 193

Conread position: 3-499
Cow position: chr6:3889693-3889186 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 451

Conread position: 4-427
Cow position: chr6:65880654-65881086 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 5-168
Cow position: chr6:10054402-10054567 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 51

Conread position: 5-427
Cow position: chr6:65822338-65821907 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 5-456
Cow position: chr6:65900130-65899653 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 215

Conread position: 9-432
Cow position: chr6:58409120-58408688 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 9-435
Cow position: chr6:2374496-2374927 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 145

Conread position: 9-435
Cow position: chr6:34127141-34127580 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 14-431
Cow position: chr6:24238862-24239288 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 120

Conread position: 17-465
Cow position: chr6:43793957-43793500 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 18

Conread position: 19-435
Cow position: chr6:1412133-1411713 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 98

Conread position: 26-419
Cow position: chr6:25214078-25214469 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 40

Conread position: 90-435
Cow position: chr6:32074859-32074508 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 50, 43

Conread position: 96-435
Cow position: chr6:7866869-7866524 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 117-435
Cow position: chr6:3148908-3149231 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 40

Conread position: 126-435
Cow position: chr6:39908441-39908754 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 114

Conread position: 178-456
Cow position: chr6:40315024-40315292 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 51

Conread position: 218-428
Cow position: chr6:40251672-40251883 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 276-556
Cow position: chr6:10641228-10641509 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 64

Conread position: 299-510
Cow position: chr6:52805122-52805329 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 77, 45

Conread position: 312-460
Cow position: chr6:12650845-12650701 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 125, 0

Conread position: 329-435
Cow position: chr6:40275209-40275315 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 93
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.