Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-168
Cow position: chr7:60857494-60857326 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 1-225
Cow position: chr7:545088-545316 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 112

Conread position: 1-257
Cow position: chr7:68778489-68778238 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 186, 76

Conread position: 1-269
Cow position: chr7:20306916-20306657 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 36

Conread position: 1-280
Cow position: chr7:27144201-27144486 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 280

Conread position: 1-284
Cow position: chr7:47374871-47375162 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-285
Cow position: chr7:102724-102438 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 73, 17

Conread position: 1-285
Cow position: chr7:53990617-53990895 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 32

Conread position: 1-329
Cow position: chr7:695709-696040 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 36

Conread position: 1-370
Cow position: chr7:26025913-26026287 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 294

Conread position: 1-375
Cow position: chr7:26925163-26924782 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 215

Conread position: 1-378
Cow position: chr7:38536392-38536767 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 120

Conread position: 1-388
Cow position: chr7:26890676-26891077 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 49

Conread position: 1-399
Cow position: chr7:41870057-41869664 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 60

Conread position: 1-420
Cow position: chr7:1357795-1357384 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 37

Conread position: 1-424
Cow position: chr7:3552385-3551963 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 286
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 180, 36

Conread position: 1-427
Cow position: chr7:994109-994539 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 123

Conread position: 1-431
Cow position: chr7:7257082-7257506 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 36

Conread position: 1-432
Cow position: chr7:48633274-48633693 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 1-434
Cow position: chr7:36085212-36085643 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 38

Conread position: 1-435
Cow position: chr7:16998-16555 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr7:3234809-3234366 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr7:3301280-3300839 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 371

Conread position: 1-435
Cow position: chr7:11446430-11446873 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 112

Conread position: 1-435
Cow position: chr7:20528801-20528358 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 1-435
Cow position: chr7:20555588-20556031 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 1-435
Cow position: chr7:21320030-21320473 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr7:23816096-23815653 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr7:25439398-25439827 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 38

Conread position: 1-435
Cow position: chr7:52120205-52119768 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 163

Conread position: 1-435
Cow position: chr7:61559087-61559530 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-460
Cow position: chr7:21975861-21975409 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 317

Conread position: 1-465
Cow position: chr7:63385224-63385684 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 134

Conread position: 1-465
Cow position: chr7:68479041-68479511 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 445

Conread position: 1-499
Cow position: chr7:21310083-21310593 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 253

Conread position: 1-503
Cow position: chr7:3729850-3730367 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 332
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 42, 35

Conread position: 1-515
Cow position: chr7:1400486-1399959 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 55

Conread position: 1-529
Cow position: chr7:47050577-47051097 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 166

Conread position: 1-547
Cow position: chr7:41489993-41490531 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 122

Conread position: 1-553
Cow position: chr7:35287687-35287122 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 307

Conread position: 1-604
Cow position: chr7:3154657-3155262 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 21

Conread position: 1-604
Cow position: chr7:51013843-51014424 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 137

Conread position: 2-188
Cow position: chr7:51911477-51911287 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 72, 48

Conread position: 2-288
Cow position: chr7:68436170-68435878 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 273

Conread position: 2-351
Cow position: chr7:6489435-6489086 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 150

Conread position: 3-137
Cow position: chr7:24421709-24421845 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 3-419
Cow position: chr7:54602727-54603152 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 3-422
Cow position: chr7:10431542-10431114 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 3-422
Cow position: chr7:45949271-45948848 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 97

Conread position: 3-427
Cow position: chr7:750809-751223 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 40, 15

Conread position: 3-427
Cow position: chr7:24808591-24808158 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-427
Cow position: chr7:30119661-30119247 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 284
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 71, 149

Conread position: 3-427
Cow position: chr7:34485786-34486223 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 48

Conread position: 3-431
Cow position: chr7:1372776-1372339 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr7:8145362-8144931 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 116

Conread position: 3-431
Cow position: chr7:14139720-14139288 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 145

Conread position: 3-431
Cow position: chr7:19924938-19924514 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-431
Cow position: chr7:21127781-21127350 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 150

Conread position: 3-431
Cow position: chr7:21985275-21985712 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr7:33406367-33405929 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 313

Conread position: 3-431
Cow position: chr7:39791616-39792068 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr7:46902200-46901768 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-431
Cow position: chr7:55538041-55537605 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 387

Conread position: 3-431
Cow position: chr7:64242066-64241635 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 3-431
Cow position: chr7:67798728-67799164 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-435
Cow position: chr7:26893626-26894085 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 132

Conread position: 3-435
Cow position: chr7:67416921-67417359 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 370

Conread position: 3-465
Cow position: chr7:446755-446286 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 434

Conread position: 3-465
Cow position: chr7:1611331-1610867 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 47

Conread position: 3-465
Cow position: chr7:5662252-5662717 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 154

Conread position: 3-465
Cow position: chr7:21235135-21234667 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 396

Conread position: 3-486
Cow position: chr7:13537707-13537219 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 351

Conread position: 3-503
Cow position: chr7:63020729-63021232 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 335

Conread position: 5-435
Cow position: chr7:6648777-6648339 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 128

Conread position: 5-435
Cow position: chr7:27786502-27786937 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 204

Conread position: 5-604
Cow position: chr7:29370701-29370112 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 134

Conread position: 6-435
Cow position: chr7:1449364-1449800 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 129

Conread position: 9-380
Cow position: chr7:27102231-27101852 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 27

Conread position: 9-431
Cow position: chr7:20799560-20799133 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 360

Conread position: 9-435
Cow position: chr7:6642996-6642560 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 126

Conread position: 9-435
Cow position: chr7:11466855-11466422 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 102

Conread position: 14-322
Cow position: chr7:20106402-20106089 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 60, 239

Conread position: 21-431
Cow position: chr7:34148986-34149411 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-460
Cow position: chr7:35297374-35296932 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 423

Conread position: 27-454
Cow position: chr7:68907743-68908167 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 148

Conread position: 74-409
Cow position: chr7:33878415-33878080 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 207

Conread position: 75-503
Cow position: chr7:58993150-58993582 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 178

Conread position: 90-604
Cow position: chr7:68778180-68777677 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 47

Conread position: 113-471
Cow position: chr7:68858121-68857754 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 22

Conread position: 113-586
Cow position: chr7:39108239-39107776 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 37

Conread position: 141-392
Cow position: chr7:59028014-59028263 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 164

Conread position: 151-435
Cow position: chr7:65339681-65339396 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 189
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 29

Conread position: 151-503
Cow position: chr7:68478472-68478835 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 202

Conread position: 175-604
Cow position: chr7:29470180-29470605 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 27

Conread position: 177-432
Cow position: chr7:60463206-60463463 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 208-450
Cow position: chr7:68232029-68232272 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 88

Conread position: 217-494
Cow position: chr7:63550592-63550320 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 212, 71

Conread position: 219-602
Cow position: chr7:24934864-24934485 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 88

Conread position: 297-428
Cow position: chr7:27147429-27147559 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 113
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 306-528
Cow position: chr7:54196069-54195839 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Show alignments to all cow chromosomes.