Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-165
Cow position: chr8:36292232-36292397 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 73, 0

Conread position: 1-175
Cow position: chr8:46945065-46944891 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 78, 21

Conread position: 1-190
Cow position: chr8:12505059-12505251 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 1-192
Cow position: chr8:51668198-51668006 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 73, 166

Conread position: 1-255
Cow position: chr8:29582003-29582268 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 0

Conread position: 1-257
Cow position: chr8:44076958-44076718 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 145

Conread position: 1-363
Cow position: chr8:8316573-8316211 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 1-402
Cow position: chr8:61067178-61066775 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 145

Conread position: 1-409
Cow position: chr8:27983736-27983319 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 375

Conread position: 1-412
Cow position: chr8:9540428-9540015 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 53

Conread position: 1-417
Cow position: chr8:9135829-9135420 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 279
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 73, 155

Conread position: 1-428
Cow position: chr8:8557086-8556651 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 143

Conread position: 1-428
Cow position: chr8:11761364-11761776 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 34

Conread position: 1-431
Cow position: chr8:42759025-42759444 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 166

Conread position: 1-431
Cow position: chr8:47069745-47069305 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr8:1154246-1153803 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr8:2885806-2886255 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr8:8518518-8518079 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 243

Conread position: 1-435
Cow position: chr8:8656154-8655714 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr8:9275081-9275515 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 1-435
Cow position: chr8:9735310-9735751 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr8:10748438-10748879 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 1-435
Cow position: chr8:27578469-27578906 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 203

Conread position: 1-435
Cow position: chr8:45189157-45189588 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 198

Conread position: 1-435
Cow position: chr8:47074331-47074772 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 1-435
Cow position: chr8:50934184-50934605 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 38

Conread position: 1-465
Cow position: chr8:44036719-44036247 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 35

Conread position: 1-470
Cow position: chr8:45448510-45448992 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 306

Conread position: 1-471
Cow position: chr8:32930576-32931047 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 72

Conread position: 1-496
Cow position: chr8:46222263-46221764 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 326
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 73, 33

Conread position: 1-514
Cow position: chr8:45693564-45693035 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 239

Conread position: 1-603
Cow position: chr8:61035303-61034677 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 111

Conread position: 1-604
Cow position: chr8:11970499-11969927 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 1-604
Cow position: chr8:24420463-24419868 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 56

Conread position: 1-604
Cow position: chr8:42161659-42161063 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 149

Conread position: 1-604
Cow position: chr8:44693357-44693957 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 45

Conread position: 2-269
Cow position: chr8:30490672-30490403 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 72, 192

Conread position: 2-572
Cow position: chr8:45161302-45160734 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 123

Conread position: 3-176
Cow position: chr8:45795680-45795505 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 169

Conread position: 3-179
Cow position: chr8:19329019-19329198 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 71, 0

Conread position: 3-298
Cow position: chr8:8402138-8401832 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 71, 0

Conread position: 3-368
Cow position: chr8:25407512-25407882 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 132

Conread position: 3-375
Cow position: chr8:36637593-36637214 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 138

Conread position: 3-383
Cow position: chr8:46091798-46091417 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 237

Conread position: 3-392
Cow position: chr8:11801299-11801695 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 144

Conread position: 3-407
Cow position: chr8:8910287-8910697 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 46

Conread position: 3-422
Cow position: chr8:38390431-38390859 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-428
Cow position: chr8:19050551-19050973 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 68

Conread position: 3-431
Cow position: chr8:3784773-3785210 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:3856950-3856516 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 7

Conread position: 3-431
Cow position: chr8:10743567-10743130 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:11831761-11832200 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:17311082-17311518 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 94

Conread position: 3-431
Cow position: chr8:23770703-23771135 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 107

Conread position: 3-431
Cow position: chr8:25522462-25522899 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 425

Conread position: 3-431
Cow position: chr8:25776601-25776173 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 73

Conread position: 3-431
Cow position: chr8:32319483-32319049 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 133

Conread position: 3-431
Cow position: chr8:36636478-36636044 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 138

Conread position: 3-431
Cow position: chr8:39196152-39195717 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 225

Conread position: 3-431
Cow position: chr8:44244511-44244073 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:47662263-47661825 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:49214493-49214927 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 3-431
Cow position: chr8:50289087-50288651 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 141

Conread position: 3-431
Cow position: chr8:50993851-50994288 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr8:59262830-59262393 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-435
Cow position: chr8:8229718-8229277 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 3-456
Cow position: chr8:4686458-4686916 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 23

Conread position: 3-465
Cow position: chr8:2171316-2170848 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 132

Conread position: 3-465
Cow position: chr8:24916273-24915807 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 88

Conread position: 3-465
Cow position: chr8:33588442-33588906 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 254

Conread position: 3-465
Cow position: chr8:42483992-42484444 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 181

Conread position: 3-466
Cow position: chr8:5016246-5016715 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 101

Conread position: 4-450
Cow position: chr8:47670520-47670968 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 366

Conread position: 4-459
Cow position: chr8:45317059-45316598 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 4-460
Cow position: chr8:23216805-23217285 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 177

Conread position: 5-334
Cow position: chr8:53427393-53427724 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 133

Conread position: 5-435
Cow position: chr8:1319109-1319549 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 6-435
Cow position: chr8:22572228-22571791 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 7-412
Cow position: chr8:47885101-47885510 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 333

Conread position: 9-435
Cow position: chr8:1349175-1348731 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 160

Conread position: 9-435
Cow position: chr8:32631956-32631523 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 297

Conread position: 9-604
Cow position: chr8:38607448-38606852 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 27

Conread position: 21-604
Cow position: chr8:33430017-33430595 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 74

Conread position: 22-435
Cow position: chr8:11821405-11821816 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 50

Conread position: 36-432
Cow position: chr8:27925423-27925816 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 67-438
Cow position: chr8:21158685-21158311 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 6

Conread position: 75-435
Cow position: chr8:6065630-6065264 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 87-379
Cow position: chr8:45984819-45985114 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 197

Conread position: 102-431
Cow position: chr8:14591746-14591402 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 102-431
Cow position: chr8:60060547-60060880 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 281

Conread position: 111-435
Cow position: chr8:26005424-26005092 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 204

Conread position: 119-511
Cow position: chr8:25542684-25543089 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 269

Conread position: 127-431
Cow position: chr8:12449141-12449448 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 13

Conread position: 141-391
Cow position: chr8:38578731-38578475 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 186-464
Cow position: chr8:19329990-19330268 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 252

Conread position: 253-604
Cow position: chr8:16083649-16084018 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 97

Conread position: 273-432
Cow position: chr8:46600635-46600795 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 138
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 0

Conread position: 282-529
Cow position: chr8:47672822-47673071 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 213

Conread position: 284-432
Cow position: chr8:42420212-42420063 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 130
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 105, 0

Conread position: 342-432
Cow position: chr8:8316032-8315942 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 342-435
Cow position: chr8:32437669-32437576 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.