Cow genome map

Conread name: Emb1-C0005196_O14

Conread position: 1-156
Cow position: chr9:1294102-1293944 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 1-174
Cow position: chr9:2697217-2697042 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 134

Conread position: 1-188
Cow position: chr9:8969213-8969022 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 1-188
Cow position: chr9:54360317-54360505 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 1-284
Cow position: chr9:831720-831430 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 70, 278

Conread position: 1-315
Cow position: chr9:59425399-59425712 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 32, 38

Conread position: 1-337
Cow position: chr9:46626085-46625741 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 152

Conread position: 1-370
Cow position: chr9:4672321-4672698 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 358

Conread position: 1-377
Cow position: chr9:222835-222449 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 326

Conread position: 1-387
Cow position: chr9:1252253-1251867 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 154

Conread position: 1-415
Cow position: chr9:792799-792377 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 33

Conread position: 1-429
Cow position: chr9:59443566-59444000 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 164

Conread position: 1-435
Cow position: chr9:163776-163347 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 36

Conread position: 1-435
Cow position: chr9:781088-780648 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 38

Conread position: 1-435
Cow position: chr9:1076485-1076041 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr9:3155746-3156179 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 304

Conread position: 1-435
Cow position: chr9:15072230-15072670 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr9:16268074-16268528 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 1-435
Cow position: chr9:17064684-17064227 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 1-435
Cow position: chr9:25483587-25484029 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 351

Conread position: 1-435
Cow position: chr9:27933808-27934245 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 270

Conread position: 1-435
Cow position: chr9:28677688-28678129 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 1-435
Cow position: chr9:30826395-30826838 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr9:31020524-31020978 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-435
Cow position: chr9:31194453-31194010 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 1-435
Cow position: chr9:34242884-34242441 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 301

Conread position: 1-435
Cow position: chr9:36724215-36724658 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-435
Cow position: chr9:37064082-37063647 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 152

Conread position: 1-435
Cow position: chr9:37129824-37129389 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 325

Conread position: 1-435
Cow position: chr9:45873063-45873505 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 1-450
Cow position: chr9:2500582-2500124 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 438

Conread position: 1-450
Cow position: chr9:9055352-9054894 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 1-471
Cow position: chr9:2185675-2186154 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 155

Conread position: 1-486
Cow position: chr9:6757286-6757777 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 97

Conread position: 1-506
Cow position: chr9:64118545-64119052 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 92

Conread position: 1-522
Cow position: chr9:6111262-6110751 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 2-197
Cow position: chr9:13220036-13220235 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 72, 187

Conread position: 2-229
Cow position: chr9:20310016-20309789 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 72, 8

Conread position: 2-418
Cow position: chr9:4984489-4984911 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 71

Conread position: 2-422
Cow position: chr9:47001919-47002332 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 37

Conread position: 2-431
Cow position: chr9:6051332-6050896 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 77

Conread position: 3-251
Cow position: chr9:7002269-7002524 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 58

Conread position: 3-257
Cow position: chr9:6830833-6830580 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 184, 31

Conread position: 3-382
Cow position: chr9:28021263-28021654 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 3-402
Cow position: chr9:37163092-37162683 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-415
Cow position: chr9:27034423-27034836 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 3-422
Cow position: chr9:9012826-9013250 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 26

Conread position: 3-427
Cow position: chr9:10321538-10321956 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 77

Conread position: 3-428
Cow position: chr9:59455883-59455449 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 117

Conread position: 3-429
Cow position: chr9:3548457-3548023 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 308

Conread position: 3-431
Cow position: chr9:2170771-2171210 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 318

Conread position: 3-431
Cow position: chr9:7062377-7061940 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr9:16175483-16175919 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 142

Conread position: 3-431
Cow position: chr9:29629031-29628595 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 365

Conread position: 3-431
Cow position: chr9:30672086-30672520 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 130

Conread position: 3-431
Cow position: chr9:31807253-31807685 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 46

Conread position: 3-431
Cow position: chr9:37971491-37971058 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-431
Cow position: chr9:42309399-42309835 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 3-431
Cow position: chr9:42568586-42569023 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 426

Conread position: 3-431
Cow position: chr9:59535814-59536247 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 31

Conread position: 3-435
Cow position: chr9:1996197-1995758 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 276

Conread position: 3-435
Cow position: chr9:3542526-3542963 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 150

Conread position: 3-435
Cow position: chr9:10315083-10315523 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 360

Conread position: 3-435
Cow position: chr9:25023586-25023145 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-465
Cow position: chr9:4532210-4532675 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 144

Conread position: 3-465
Cow position: chr9:60278306-60277838 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 449

Conread position: 4-431
Cow position: chr9:59174440-59174008 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 149

Conread position: 5-309
Cow position: chr9:2199825-2200137 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 57

Conread position: 5-353
Cow position: chr9:29028511-29028151 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 6-435
Cow position: chr9:131476-131033 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 16

Conread position: 7-466
Cow position: chr9:3586075-3586555 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 229

Conread position: 7-493
Cow position: chr9:26002411-26001931 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 314
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 129

Conread position: 10-502
Cow position: chr9:3356257-3355762 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 56

Conread position: 14-460
Cow position: chr9:34992110-34992574 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 451

Conread position: 22-435
Cow position: chr9:3006511-3006089 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 22-435
Cow position: chr9:28626305-28625885 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 23-167
Cow position: chr9:1979675-1979821 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 74

Conread position: 26-428
Cow position: chr9:50789416-50789826 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 253

Conread position: 34-396
Cow position: chr9:4280209-4280573 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 40, 71

Conread position: 41-590
Cow position: chr9:13477457-13476911 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 32

Conread position: 67-435
Cow position: chr9:25755443-25755067 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 98-451
Cow position: chr9:18836823-18837188 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 136

Conread position: 107-431
Cow position: chr9:32968791-32969119 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 25

Conread position: 121-497
Cow position: chr9:6973964-6974352 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 48

Conread position: 127-431
Cow position: chr9:51182353-51182042 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 140-431
Cow position: chr9:1979832-1980131 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 173-359
Cow position: chr9:34719858-34720053 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 203-435
Cow position: chr9:64018536-64018303 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 204-453
Cow position: chr9:15683860-15684103 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 73, 31

Conread position: 235-590
Cow position: chr9:44817814-44818173 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 262

Conread position: 243-532
Cow position: chr9:20309568-20309278 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 251

Conread position: 255-435
Cow position: chr9:31064408-31064589 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 263-435
Cow position: chr9:8968966-8968801 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 23, 124

Conread position: 280-435
Cow position: chr9:60651711-60651556 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 92
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 306-515
Cow position: chr9:3803069-3803280 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 128, 190

Conread position: 393-604
Cow position: chr9:44794577-44794786 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 99

Show alignments to all cow chromosomes.