Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 4-335 |
| Cow position: | chr17:11913098-11913438 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 5-332 |
| Cow position: | chr17:1568567-1568907 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 38 |
| Conread position: | 5-335 |
| Cow position: | chr17:2079288-2078949 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 200 |
| Conread position: | 5-335 |
| Cow position: | chr17:13716653-13716986 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 12-328 |
| Cow position: | chr17:20209228-20209557 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 12-335 |
| Cow position: | chr17:24503153-24502818 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 13-328 |
| Cow position: | chr17:18814791-18814474 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 13-330 |
| Cow position: | chr17:33272068-33272397 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 14-594 |
| Cow position: | chr17:40811360-40810742 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 467 |
| Conread position: | 15-342 |
| Cow position: | chr17:35246909-35247239 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 127-335 |
| Cow position: | chr17:13989740-13989953 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 121, 207 |
| Conread position: | 270-594 |
| Cow position: | chr17:4635440-4635784 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 193 |
| Conread position: | 278-594 |
| Cow position: | chr17:2583721-2583383 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 188 |
| Conread position: | 291-594 |
| Cow position: | chr17:18777521-18777839 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 320-594 |
| Cow position: | chr17:14029067-14029354 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 136 |
| Conread position: | 344-497 |
| Cow position: | chr17:8449964-8449813 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 80, 119 |
| Conread position: | 344-528 |
| Cow position: | chr17:38829134-38828952 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 344-548 |
| Cow position: | chr17:11032402-11032196 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 72, 95 |
| Conread position: | 344-553 |
| Cow position: | chr17:37415635-37415848 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 344-554 |
| Cow position: | chr17:1457127-1457337 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 344-554 |
| Cow position: | chr17:21666252-21666043 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 344-554 |
| Cow position: | chr17:29471690-29471478 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 344-554 |
| Cow position: | chr17:31232923-31232716 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 344-590 |
| Cow position: | chr17:29156626-29156372 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 113 |
| Conread position: | 344-594 |
| Cow position: | chr17:1311510-1311771 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 344-594 |
| Cow position: | chr17:1672551-1672291 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 147, 76 |
| Conread position: | 344-594 |
| Cow position: | chr17:2078891-2078636 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 141, 15 |
| Conread position: | 344-594 |
| Cow position: | chr17:4063591-4063331 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 71, 105 |
| Conread position: | 344-594 |
| Cow position: | chr17:4085320-4085059 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:4211182-4210920 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:8222958-8222696 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:11083882-11084144 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:15328534-15328272 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:16118212-16118463 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 344-594 |
| Cow position: | chr17:16447229-16447487 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 104 |
| Conread position: | 344-594 |
| Cow position: | chr17:18099821-18100083 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 106 |
| Conread position: | 344-594 |
| Cow position: | chr17:24026730-24026992 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-594 |
| Cow position: | chr17:25739549-25739287 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 344-594 |
| Cow position: | chr17:29950465-29950206 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-596 |
| Cow position: | chr17:22563397-22563133 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 110 |
| Conread position: | 344-597 |
| Cow position: | chr17:144953-145206 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 344-597 |
| Cow position: | chr17:1568967-1569227 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 155, 76 |
| Conread position: | 344-597 |
| Cow position: | chr17:2839275-2839021 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 180, 76 |
| Conread position: | 344-597 |
| Cow position: | chr17:20084557-20084824 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 345-594 |
| Cow position: | chr17:184399-184138 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr17:1970403-1970142 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-594 |
| Cow position: | chr17:2265440-2265186 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr17:5806237-5806498 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr17:6612274-6612013 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr17:8212308-8212052 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 345-594 |
| Cow position: | chr17:10270107-10270361 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 140, 50 |
| Conread position: | 345-594 |
| Cow position: | chr17:15439043-15438784 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 345-594 |
| Cow position: | chr17:15708741-15709002 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr17:15809239-15808978 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 345-594 |
| Cow position: | chr17:17957849-17957595 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr17:20225854-20225593 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr17:20391026-20390765 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr17:21770932-21770671 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 112 |
| Conread position: | 345-594 |
| Cow position: | chr17:24785442-24785181 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr17:43471339-43471599 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-595 |
| Cow position: | chr17:14212767-14213027 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 345-597 |
| Cow position: | chr17:2244820-2245071 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 139, 50 |
| Conread position: | 345-597 |
| Cow position: | chr17:15140087-15140352 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 346-596 |
| Cow position: | chr17:20215334-20215079 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 347-594 |
| Cow position: | chr17:15118067-15117808 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 348-594 |
| Cow position: | chr17:17221562-17221308 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 180, 72 |
| Conread position: | 349-593 |
| Cow position: | chr17:36266023-36266266 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 178, 103 |
| Conread position: | 349-594 |
| Cow position: | chr17:2177228-2176971 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 349-594 |
| Cow position: | chr17:14232456-14232713 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 350-594 |
| Cow position: | chr17:27978351-27978102 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 350-597 |
| Cow position: | chr17:5043348-5043606 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 135, 101 |
| Conread position: | 363-594 |
| Cow position: | chr17:6263089-6262847 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 372-597 |
| Cow position: | chr17:50875-51111 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 83 |
Show alignments to all cow chromosomes.