Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 1-335 |
| Cow position: | chr19:42274339-42274683 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 159 |
| Conread position: | 1-336 |
| Cow position: | chr19:2260567-2260909 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 5-326 |
| Cow position: | chr19:28611234-28610920 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 175, 24 |
| Conread position: | 5-335 |
| Cow position: | chr19:4448093-4447758 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 82 |
| Conread position: | 10-335 |
| Cow position: | chr19:50833030-50833363 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 296 |
| Conread position: | 12-335 |
| Cow position: | chr19:39181664-39182000 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 12-335 |
| Cow position: | chr19:39876982-39877308 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 90 |
| Conread position: | 13-326 |
| Cow position: | chr19:42647523-42647831 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 128 |
| Conread position: | 13-335 |
| Cow position: | chr19:30937343-30937680 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 13-336 |
| Cow position: | chr19:38396747-38397074 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 105, 221 |
| Conread position: | 13-354 |
| Cow position: | chr19:46873152-46873503 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 14-336 |
| Cow position: | chr19:14581155-14580819 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 23-335 |
| Cow position: | chr19:33945430-33945106 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 86-328 |
| Cow position: | chr19:35843645-35843400 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 110-333 |
| Cow position: | chr19:3177234-3177004 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 114-520 |
| Cow position: | chr19:9542934-9543355 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 322 |
| Conread position: | 175-335 |
| Cow position: | chr19:33616770-33616598 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 178-379 |
| Cow position: | chr19:21291432-21291222 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 180-335 |
| Cow position: | chr19:736045-736208 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 195-335 |
| Cow position: | chr19:2269616-2269761 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 195-335 |
| Cow position: | chr19:30473460-30473605 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 205-341 |
| Cow position: | chr19:20403957-20403816 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 326-521 |
| Cow position: | chr19:3221614-3221417 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 326-594 |
| Cow position: | chr19:34985590-34985322 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 128 |
| Conread position: | 334-527 |
| Cow position: | chr19:27613011-27613204 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 344-554 |
| Cow position: | chr19:1581427-1581641 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 344-557 |
| Cow position: | chr19:35782915-35783131 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 344-593 |
| Cow position: | chr19:33625054-33624800 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 344-593 |
| Cow position: | chr19:48478044-48477795 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 344-594 |
| Cow position: | chr19:207982-207720 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:799848-799597 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 39 |
| Conread position: | 344-594 |
| Cow position: | chr19:930301-930041 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:1293832-1293571 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 82 |
| Conread position: | 344-594 |
| Cow position: | chr19:5732977-5732718 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:7491572-7491317 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 344-594 |
| Cow position: | chr19:9099098-9098833 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 344-594 |
| Cow position: | chr19:12209448-12209714 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 344-594 |
| Cow position: | chr19:12652357-12652090 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 98 |
| Conread position: | 344-594 |
| Cow position: | chr19:32140479-32140222 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:32208867-32208628 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 344-594 |
| Cow position: | chr19:33648843-33649096 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 344-594 |
| Cow position: | chr19:33876898-33876636 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:33945048-33944787 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 104 |
| Conread position: | 344-594 |
| Cow position: | chr19:34905843-34906105 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:39182058-39182320 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 344-594 |
| Cow position: | chr19:39394683-39394421 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr19:48534210-48533948 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 344-597 |
| Cow position: | chr19:30937738-30938013 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 345-526 |
| Cow position: | chr19:12601223-12601399 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-553 |
| Cow position: | chr19:46873544-46873756 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 103 |
| Conread position: | 345-554 |
| Cow position: | chr19:267585-267374 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 345-554 |
| Cow position: | chr19:29624517-29624304 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-555 |
| Cow position: | chr19:55217286-55217072 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 345-594 |
| Cow position: | chr19:5026711-5026972 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:5044216-5044461 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 345-594 |
| Cow position: | chr19:9118291-9118030 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:9704711-9704966 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 345-594 |
| Cow position: | chr19:10613709-10613448 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:20611815-20611554 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:22391698-22391437 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:22512725-22512465 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 109 |
| Conread position: | 345-594 |
| Cow position: | chr19:24734618-24734363 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 139, 58 |
| Conread position: | 345-594 |
| Cow position: | chr19:27081934-27082188 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-594 |
| Cow position: | chr19:28596857-28596596 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 143, 76 |
| Conread position: | 345-594 |
| Cow position: | chr19:30037426-30037687 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:33119243-33119504 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:33528328-33528067 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:40849008-40849269 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr19:41204746-41205007 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:45464614-45464367 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 345-594 |
| Cow position: | chr19:48626540-48626279 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr19:55378374-55378115 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-596 |
| Cow position: | chr19:41814-41550 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-596 |
| Cow position: | chr19:743235-743483 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 139, 51 |
| Conread position: | 345-597 |
| Cow position: | chr19:4447696-4447430 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 99 |
| Conread position: | 345-597 |
| Cow position: | chr19:30473664-30473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 346-554 |
| Cow position: | chr19:20403763-20403552 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 138, 74 |
| Conread position: | 348-554 |
| Cow position: | chr19:28370002-28369789 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 133 |
| Conread position: | 348-594 |
| Cow position: | chr19:2269823-2270081 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 107 |
| Conread position: | 348-597 |
| Cow position: | chr19:164656-164916 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 349-594 |
| Cow position: | chr19:35843331-35843076 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 108 |
| Conread position: | 349-597 |
| Cow position: | chr19:2019286-2019542 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 109 |
| Conread position: | 352-561 |
| Cow position: | chr19:28450297-28450086 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 355-594 |
| Cow position: | chr19:55421517-55421267 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 100 |
Show alignments to all cow chromosomes.