Cow genome map

Conread name: Emb1-C0005211_E02

Conread position: 4-341
Cow position: chr20:13574717-13575053 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 182

Conread position: 4-369
Cow position: chr20:42851262-42850904 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 253
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 106, 61

Conread position: 5-354
Cow position: chr20:18490792-18490432 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 147

Conread position: 6-336
Cow position: chr20:34597519-34597859 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 52

Conread position: 10-335
Cow position: chr20:40423493-40423826 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 105, 80

Conread position: 12-355
Cow position: chr20:15240207-15240557 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 294

Conread position: 12-456
Cow position: chr20:29319022-29318554 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 434

Conread position: 13-335
Cow position: chr20:41110591-41110919 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 204

Conread position: 34-335
Cow position: chr20:14472637-14472947 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 35-326
Cow position: chr20:18321761-18322052 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 81, 33

Conread position: 38-328
Cow position: chr20:36882978-36883269 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 13

Conread position: 40-335
Cow position: chr20:9007026-9007332 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 71-328
Cow position: chr20:31000970-31000706 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 36, 128

Conread position: 99-335
Cow position: chr20:3781953-3782200 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 10, 0

Conread position: 155-333
Cow position: chr20:13660660-13660840 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 57, 97

Conread position: 170-335
Cow position: chr20:3652309-3652483 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 15

Conread position: 195-335
Cow position: chr20:33564067-33563920 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 258-594
Cow position: chr20:38001025-38000673 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 231
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 96

Conread position: 261-554
Cow position: chr20:13653811-13654103 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 87

Conread position: 275-456
Cow position: chr20:6474689-6474502 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 48

Conread position: 307-594
Cow position: chr20:23466162-23466467 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 153

Conread position: 310-594
Cow position: chr20:12567836-12568133 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 46

Conread position: 320-554
Cow position: chr20:33246840-33247074 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 102

Conread position: 322-594
Cow position: chr20:33181028-33181315 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 80, 145

Conread position: 323-594
Cow position: chr20:14672800-14672525 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 95, 14

Conread position: 337-554
Cow position: chr20:32085001-32085223 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 92, 25

Conread position: 339-554
Cow position: chr20:6053907-6054124 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 24

Conread position: 339-584
Cow position: chr20:10035296-10035543 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 147, 91

Conread position: 340-594
Cow position: chr20:15068263-15067997 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 24

Conread position: 343-554
Cow position: chr20:9707689-9707899 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 142, 52

Conread position: 344-473
Cow position: chr20:34375406-34375278 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 66

Conread position: 344-528
Cow position: chr20:25856613-25856436 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 142, 92

Conread position: 344-528
Cow position: chr20:28294766-28294582 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 28

Conread position: 344-545
Cow position: chr20:26076001-26075797 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 74, 11

Conread position: 344-553
Cow position: chr20:24399420-24399633 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 96

Conread position: 344-553
Cow position: chr20:37271715-37271503 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 162, 0

Conread position: 344-554
Cow position: chr20:7995098-7995312 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 62, 111

Conread position: 344-554
Cow position: chr20:19352624-19352839 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 139, 76

Conread position: 344-554
Cow position: chr20:26999940-26999727 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 113

Conread position: 344-554
Cow position: chr20:34597915-34598124 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 112

Conread position: 344-586
Cow position: chr20:16515768-16515515 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 111

Conread position: 344-594
Cow position: chr20:5269589-5269847 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 44, 111

Conread position: 344-594
Cow position: chr20:7593014-7593269 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 147, 56

Conread position: 344-594
Cow position: chr20:7597412-7597674 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 111

Conread position: 344-594
Cow position: chr20:10405139-10404880 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 111

Conread position: 344-594
Cow position: chr20:12434955-12435215 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 111

Conread position: 344-594
Cow position: chr20:15295463-15295203 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 73

Conread position: 344-594
Cow position: chr20:15527190-15526928 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 111

Conread position: 344-594
Cow position: chr20:19017967-19018221 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 62, 67

Conread position: 344-594
Cow position: chr20:19155718-19155974 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 71, 111

Conread position: 344-594
Cow position: chr20:19845220-19844959 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 103, 76

Conread position: 344-594
Cow position: chr20:22209066-22208804 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 111

Conread position: 344-594
Cow position: chr20:34968428-34968165 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 112

Conread position: 344-597
Cow position: chr20:9996981-9996713 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 71, 113

Conread position: 344-597
Cow position: chr20:14512140-14511874 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 110, 44

Conread position: 345-554
Cow position: chr20:20731702-20731489 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 96

Conread position: 345-594
Cow position: chr20:775102-774841 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 95

Conread position: 345-594
Cow position: chr20:3808329-3808590 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:5085893-5086154 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:5503303-5503564 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 110

Conread position: 345-594
Cow position: chr20:6550554-6550815 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 73, 110

Conread position: 345-594
Cow position: chr20:8445856-8445596 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 96

Conread position: 345-594
Cow position: chr20:9223296-9223035 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:9536339-9536088 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 75

Conread position: 345-594
Cow position: chr20:12177046-12177307 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 110

Conread position: 345-594
Cow position: chr20:13506118-13506375 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 110

Conread position: 345-594
Cow position: chr20:14925198-14925459 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:15089928-15090189 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 110

Conread position: 345-594
Cow position: chr20:16559088-16559349 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:20439525-20439787 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 110

Conread position: 345-594
Cow position: chr20:21720000-21719741 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 61, 103

Conread position: 345-594
Cow position: chr20:22048810-22048549 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:22060733-22060994 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:24567828-24568086 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 93

Conread position: 345-594
Cow position: chr20:26052909-26053170 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:26738221-26737960 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 95

Conread position: 345-594
Cow position: chr20:28443905-28444165 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 96

Conread position: 345-594
Cow position: chr20:30146875-30146618 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 140, 91

Conread position: 345-594
Cow position: chr20:30384801-30385062 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 95

Conread position: 345-594
Cow position: chr20:30479553-30479291 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 75

Conread position: 345-594
Cow position: chr20:30579307-30579046 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 140, 75

Conread position: 345-594
Cow position: chr20:34231426-34231673 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 140, 75

Conread position: 345-594
Cow position: chr20:34643453-34643200 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 140, 75

Conread position: 345-594
Cow position: chr20:40256106-40255847 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 70, 110

Conread position: 345-597
Cow position: chr20:13303854-13304119 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 95

Conread position: 347-594
Cow position: chr20:6135549-6135807 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 68, 108

Conread position: 349-594
Cow position: chr20:7568532-7568782 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 142, 51

Conread position: 349-594
Cow position: chr20:29806494-29806757 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 143

Conread position: 351-594
Cow position: chr20:13955059-13954810 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 177, 69

Conread position: 352-554
Cow position: chr20:35843991-35844202 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 56, 106

Conread position: 355-594
Cow position: chr20:18490387-18490132 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 356-554
Cow position: chr20:13050123-13050325 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 98

Conread position: 363-594
Cow position: chr20:13766317-13766075 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 54

Show alignments to all cow chromosomes.