Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 1-326 |
| Cow position: | chr23:40774107-40773772 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-335 |
| Cow position: | chr23:6173241-6173587 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 260 |
| Conread position: | 1-335 |
| Cow position: | chr23:19493633-19493282 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-328 |
| Cow position: | chr23:11814084-11814421 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-335 |
| Cow position: | chr23:26305940-26305602 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 116 |
| Conread position: | 5-358 |
| Cow position: | chr23:1545515-1545159 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 166 |
| Conread position: | 5-559 |
| Cow position: | chr23:20170495-20171045 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 84 |
| Conread position: | 7-327 |
| Cow position: | chr23:29271662-29271337 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 103, 170 |
| Conread position: | 12-594 |
| Cow position: | chr23:11711927-11712554 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 471 |
| Conread position: | 13-325 |
| Cow position: | chr23:6223580-6223260 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 13-326 |
| Cow position: | chr23:30244246-30243930 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 189 |
| Conread position: | 13-335 |
| Cow position: | chr23:26829010-26828682 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 121 |
| Conread position: | 13-354 |
| Cow position: | chr23:11404919-11405271 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 182 |
| Conread position: | 14-335 |
| Cow position: | chr23:2791009-2791340 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 36-362 |
| Cow position: | chr23:23470469-23470128 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 215 |
| Conread position: | 37-336 |
| Cow position: | chr23:22143567-22143878 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 49-350 |
| Cow position: | chr23:26066638-26066332 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 156 |
| Conread position: | 72-345 |
| Cow position: | chr23:28545981-28546270 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 140 |
| Conread position: | 127-335 |
| Cow position: | chr23:36688376-36688577 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 140-335 |
| Cow position: | chr23:14839558-14839755 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 310-594 |
| Cow position: | chr23:14959543-14959836 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 310-594 |
| Cow position: | chr23:28915742-28915446 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 325-594 |
| Cow position: | chr23:22143913-22144195 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 127 |
| Conread position: | 344-457 |
| Cow position: | chr23:11405309-11405425 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 344-528 |
| Cow position: | chr23:1535498-1535317 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 106 |
| Conread position: | 344-528 |
| Cow position: | chr23:8290829-8290652 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 344-552 |
| Cow position: | chr23:40890151-40889939 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 344-554 |
| Cow position: | chr23:1311195-1311410 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 344-554 |
| Cow position: | chr23:1338118-1338327 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 108 |
| Conread position: | 344-554 |
| Cow position: | chr23:2180473-2180685 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 344-554 |
| Cow position: | chr23:16495901-16496114 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 344-554 |
| Cow position: | chr23:19493224-19493010 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 344-554 |
| Cow position: | chr23:20025309-20025095 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-567 |
| Cow position: | chr23:1325940-1326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:771116-771378 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 344-594 |
| Cow position: | chr23:1959502-1959241 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:2408837-2409098 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 104 |
| Conread position: | 344-594 |
| Cow position: | chr23:2532138-2532387 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:4436993-4436745 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 344-594 |
| Cow position: | chr23:4516908-4516654 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 180, 100 |
| Conread position: | 344-594 |
| Cow position: | chr23:4636980-4637241 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:5624203-5624459 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 344-594 |
| Cow position: | chr23:11343872-11343610 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 344-594 |
| Cow position: | chr23:11376942-11377204 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:11782161-11781898 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 344-594 |
| Cow position: | chr23:15180333-15180072 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 344-594 |
| Cow position: | chr23:15215462-15215721 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 106 |
| Conread position: | 344-594 |
| Cow position: | chr23:15528962-15528700 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:20152845-20153108 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:26828624-26828366 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 107 |
| Conread position: | 344-594 |
| Cow position: | chr23:27402509-27402250 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 344-594 |
| Cow position: | chr23:29447875-29448135 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 344-594 |
| Cow position: | chr23:30623126-30623384 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 344-594 |
| Cow position: | chr23:30634219-30634481 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr23:34347250-34346987 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 344-594 |
| Cow position: | chr23:36027877-36028139 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-597 |
| Cow position: | chr23:6173645-6173903 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 113 |
| Conread position: | 344-597 |
| Cow position: | chr23:25357721-25357455 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 345-554 |
| Cow position: | chr23:40773702-40773491 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 104 |
| Conread position: | 345-588 |
| Cow position: | chr23:27313219-27312964 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr23:954426-954683 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr23:4532323-4532584 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr23:10679459-10679720 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr23:21772535-21772797 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 345-594 |
| Cow position: | chr23:24119929-24119668 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 345-594 |
| Cow position: | chr23:29043158-29042896 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 142, 85 |
| Conread position: | 345-594 |
| Cow position: | chr23:31605802-31605541 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 139, 75 |
| Conread position: | 345-594 |
| Cow position: | chr23:31771894-31772153 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr23:37199136-37199401 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 345-594 |
| Cow position: | chr23:39745234-39744977 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 139, 106 |
| Conread position: | 345-594 |
| Cow position: | chr23:41015303-41015042 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 346-594 |
| Cow position: | chr23:21277262-21277520 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 347-594 |
| Cow position: | chr23:5396208-5396467 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 93 |
| Conread position: | 353-594 |
| Cow position: | chr23:1398860-1399100 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 64 |
| Conread position: | 355-590 |
| Cow position: | chr23:16057064-16056824 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 366-594 |
| Cow position: | chr23:2720807-2720570 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 73 |
Show alignments to all cow chromosomes.