Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 1-375 |
| Cow position: | chr24:33291631-33291998 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 197 |
| Conread position: | 1-428 |
| Cow position: | chr24:29180219-29179799 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 3-594 |
| Cow position: | chr24:36722268-36721650 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 5-335 |
| Cow position: | chr24:11886701-11886356 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 256 |
| Conread position: | 5-335 |
| Cow position: | chr24:17412283-17411944 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 173 |
| Conread position: | 5-335 |
| Cow position: | chr24:24250261-24249919 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 5-335 |
| Cow position: | chr24:25245569-25245233 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 5-335 |
| Cow position: | chr24:25677564-25677236 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 105, 130 |
| Conread position: | 5-335 |
| Cow position: | chr24:30766174-30765849 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 5-335 |
| Cow position: | chr24:45087388-45087049 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 11-336 |
| Cow position: | chr24:11839710-11839379 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 12-335 |
| Cow position: | chr24:40347219-40347549 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 12-352 |
| Cow position: | chr24:29130690-29131047 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 299 |
| Conread position: | 29-350 |
| Cow position: | chr24:40445485-40445178 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 45 |
| Conread position: | 32-335 |
| Cow position: | chr24:39123263-39122972 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 78, 110 |
| Conread position: | 37-335 |
| Cow position: | chr24:31323775-31323466 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 249 |
| Conread position: | 148-354 |
| Cow position: | chr24:7404202-7404415 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 87 |
| Conread position: | 182-553 |
| Cow position: | chr24:25439863-25439456 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 226-328 |
| Cow position: | chr24:39258481-39258375 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 291-597 |
| Cow position: | chr24:26388373-26388689 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 310-594 |
| Cow position: | chr24:36779777-36779477 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 326-597 |
| Cow position: | chr24:12203028-12203307 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 326-597 |
| Cow position: | chr24:17105391-17105675 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 131 |
| Conread position: | 330-457 |
| Cow position: | chr24:6271600-6271469 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 339-597 |
| Cow position: | chr24:36036356-36036624 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 343-594 |
| Cow position: | chr24:14760362-14760099 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 344-528 |
| Cow position: | chr24:28336593-28336773 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 145, 107 |
| Conread position: | 344-553 |
| Cow position: | chr24:38814113-38813902 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 344-554 |
| Cow position: | chr24:5910287-5910061 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 344-554 |
| Cow position: | chr24:6415630-6415417 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 344-592 |
| Cow position: | chr24:6544044-6543793 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr24:6035713-6035975 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-594 |
| Cow position: | chr24:6524464-6524203 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 344-594 |
| Cow position: | chr24:8607797-8607535 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 102 |
| Conread position: | 344-594 |
| Cow position: | chr24:12332239-12332501 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 344-594 |
| Cow position: | chr24:13496752-13496490 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 344-594 |
| Cow position: | chr24:14745828-14745570 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 159, 76 |
| Conread position: | 344-594 |
| Cow position: | chr24:17309960-17310226 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 113 |
| Conread position: | 344-594 |
| Cow position: | chr24:18223013-18223274 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr24:20283744-20284004 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 344-594 |
| Cow position: | chr24:28601562-28601819 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 344-594 |
| Cow position: | chr24:30893400-30893644 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 344-594 |
| Cow position: | chr24:31381855-31381606 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 141, 74 |
| Conread position: | 344-594 |
| Cow position: | chr24:32361388-32361639 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 344-594 |
| Cow position: | chr24:32608779-32608517 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 112 |
| Conread position: | 344-594 |
| Cow position: | chr24:33122394-33122133 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 344-594 |
| Cow position: | chr24:36556119-36556373 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 157, 76 |
| Conread position: | 344-594 |
| Cow position: | chr24:36726622-36726362 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 344-594 |
| Cow position: | chr24:40347604-40347868 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 344-595 |
| Cow position: | chr24:17566312-17566056 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 103, 76 |
| Conread position: | 344-595 |
| Cow position: | chr24:27148571-27148310 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 344-595 |
| Cow position: | chr24:34760977-34760733 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 344-597 |
| Cow position: | chr24:9071379-9071639 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 183, 108 |
| Conread position: | 344-597 |
| Cow position: | chr24:16266920-16266665 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 345-557 |
| Cow position: | chr24:40519136-40519352 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-586 |
| Cow position: | chr24:38296523-38296276 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-590 |
| Cow position: | chr24:45003882-45003638 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 144, 94 |
| Conread position: | 345-594 |
| Cow position: | chr24:3162937-3162676 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr24:3793949-3793689 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 345-594 |
| Cow position: | chr24:3851062-3850801 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 345-594 |
| Cow position: | chr24:5929246-5928985 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:5990720-5990977 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:6412945-6412684 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:7597092-7597353 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 95 |
| Conread position: | 345-594 |
| Cow position: | chr24:11104685-11104946 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:11208140-11208401 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr24:15296582-15296321 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 345-594 |
| Cow position: | chr24:16081020-16081281 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 345-594 |
| Cow position: | chr24:17161511-17161772 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:20604216-20603955 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:22047602-22047861 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 104 |
| Conread position: | 345-594 |
| Cow position: | chr24:22795025-22794765 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 345-594 |
| Cow position: | chr24:22954029-22953768 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 139, 75 |
| Conread position: | 345-594 |
| Cow position: | chr24:22975274-22975014 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 66 |
| Conread position: | 345-594 |
| Cow position: | chr24:30681666-30681916 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:36028048-36028308 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr24:40428227-40428488 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr24:40466946-40467207 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 345-595 |
| Cow position: | chr24:26412514-26412256 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 188, 75 |
| Conread position: | 345-595 |
| Cow position: | chr24:40272314-40272052 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 349-554 |
| Cow position: | chr24:14515992-14516200 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 363-594 |
| Cow position: | chr24:12090429-12090186 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 363-594 |
| Cow position: | chr24:16558831-16559073 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 366-597 |
| Cow position: | chr24:5862909-5863151 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 89 |
Show alignments to all cow chromosomes.