Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 1-328 |
| Cow position: | chr25:10012491-10012832 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 134 |
| Conread position: | 1-354 |
| Cow position: | chr25:32606955-32607308 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 1-595 |
| Cow position: | chr25:26849710-26850304 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 77 |
| Conread position: | 4-326 |
| Cow position: | chr25:33263197-33262860 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 4-335 |
| Cow position: | chr25:24636583-24636920 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 5-335 |
| Cow position: | chr25:7800578-7800240 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 171 |
| Conread position: | 12-335 |
| Cow position: | chr25:25510447-25510112 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 14-372 |
| Cow position: | chr25:17994742-17995111 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 197 |
| Conread position: | 29-335 |
| Cow position: | chr25:20614077-20613758 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 72-335 |
| Cow position: | chr25:18129692-18129423 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 110-334 |
| Cow position: | chr25:20075929-20075700 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 29, 191 |
| Conread position: | 117-362 |
| Cow position: | chr25:3171969-3172222 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 177-335 |
| Cow position: | chr25:22151494-22151328 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 278-594 |
| Cow position: | chr25:13960308-13959970 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 36, 187 |
| Conread position: | 306-593 |
| Cow position: | chr25:12082148-12082441 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 324-597 |
| Cow position: | chr25:11929376-11929649 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 72 |
| Conread position: | 343-593 |
| Cow position: | chr25:23999023-23999279 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 77 |
| Conread position: | 344-520 |
| Cow position: | chr25:4522646-4522822 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 113 |
| Conread position: | 344-527 |
| Cow position: | chr25:17992982-17993159 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 147, 76 |
| Conread position: | 344-554 |
| Cow position: | chr25:18486624-18486417 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 344-554 |
| Cow position: | chr25:23394030-23393823 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 145, 18 |
| Conread position: | 344-554 |
| Cow position: | chr25:41098033-41098240 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 60 |
| Conread position: | 344-564 |
| Cow position: | chr25:16922626-16922850 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 344-588 |
| Cow position: | chr25:20075642-20075397 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 344-592 |
| Cow position: | chr25:10136978-10136729 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 344-592 |
| Cow position: | chr25:13787139-13786879 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-593 |
| Cow position: | chr25:17657784-17657525 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 141, 20 |
| Conread position: | 344-594 |
| Cow position: | chr25:10012897-10013158 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 344-594 |
| Cow position: | chr25:11043784-11043524 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 344-594 |
| Cow position: | chr25:11955996-11955734 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:12939042-12939304 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:17562204-17561951 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 344-594 |
| Cow position: | chr25:18474363-18474109 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 344-594 |
| Cow position: | chr25:18886316-18886578 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 344-594 |
| Cow position: | chr25:20633925-20633670 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 344-594 |
| Cow position: | chr25:24655009-24655266 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:26282189-26281928 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 67, 110 |
| Conread position: | 344-594 |
| Cow position: | chr25:26931261-26930999 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 344-594 |
| Cow position: | chr25:27231524-27231262 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:28420538-28420796 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 344-594 |
| Cow position: | chr25:28863037-28862775 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:29313156-29313410 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 344-594 |
| Cow position: | chr25:32577497-32577759 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 344-594 |
| Cow position: | chr25:33574573-33574824 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 186, 76 |
| Conread position: | 344-594 |
| Cow position: | chr25:34503057-34503319 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 344-594 |
| Cow position: | chr25:37648583-37648335 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 344-594 |
| Cow position: | chr25:40322125-40322385 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 344-594 |
| Cow position: | chr25:41356632-41356894 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 344-595 |
| Cow position: | chr25:393431-393173 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 344-597 |
| Cow position: | chr25:10633843-10634107 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 345-527 |
| Cow position: | chr25:24228174-24228353 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 345-593 |
| Cow position: | chr25:27019074-27019333 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 345-594 |
| Cow position: | chr25:7223268-7223528 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr25:12756256-12756521 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 345-594 |
| Cow position: | chr25:17904804-17904543 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 345-594 |
| Cow position: | chr25:19139408-19139669 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr25:19923685-19923430 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-594 |
| Cow position: | chr25:26705718-26705979 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-594 |
| Cow position: | chr25:29802581-29802842 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr25:31073432-31073693 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr25:35372449-35372710 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr25:35589241-35588981 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 345-595 |
| Cow position: | chr25:6955232-6954969 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 345-597 |
| Cow position: | chr25:17585858-17586121 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 345-597 |
| Cow position: | chr25:29525703-29525962 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-597 |
| Cow position: | chr25:34164398-34164661 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 346-597 |
| Cow position: | chr25:26353622-26353885 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 347-555 |
| Cow position: | chr25:33262791-33262575 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 347-595 |
| Cow position: | chr25:25826612-25826350 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 347-597 |
| Cow position: | chr25:19337163-19337425 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 108 |
| Conread position: | 350-594 |
| Cow position: | chr25:37593562-37593305 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 96 |
| Conread position: | 352-593 |
| Cow position: | chr25:33838542-33838287 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 83 |
| Conread position: | 352-594 |
| Cow position: | chr25:11896774-11896521 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 357-594 |
| Cow position: | chr25:35571971-35571723 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 366-594 |
| Cow position: | chr25:18190233-18190469 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 367-564 |
| Cow position: | chr25:18269613-18269413 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 367-597 |
| Cow position: | chr25:3172258-3172500 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 53 |
| Conread position: | 390-597 |
| Cow position: | chr25:21949917-21949698 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 62 |
Show alignments to all cow chromosomes.