Cow genome map
| Conread name: | Emb1-C0005211_E02 |
| Conread position: | 1-335 |
| Cow position: | chr27:27292174-27291827 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 5-331 |
| Cow position: | chr27:30476464-30476804 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 307 |
| Conread position: | 5-335 |
| Cow position: | chr27:2936611-2936255 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 6-328 |
| Cow position: | chr27:25885573-25885240 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 77 |
| Conread position: | 12-412 |
| Cow position: | chr27:11651865-11651451 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 67-332 |
| Cow position: | chr27:28293706-28293986 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 125-334 |
| Cow position: | chr27:25472083-25472302 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 291-594 |
| Cow position: | chr27:8427294-8426971 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 136 |
| Conread position: | 311-594 |
| Cow position: | chr27:3653289-3653586 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 146 |
| Conread position: | 338-594 |
| Cow position: | chr27:11434552-11434289 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 338-594 |
| Cow position: | chr27:15871946-15872205 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 339-554 |
| Cow position: | chr27:27930581-27930370 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 344-526 |
| Cow position: | chr27:23317576-23317748 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 141, 41 |
| Conread position: | 344-553 |
| Cow position: | chr27:15866927-15867132 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 344-554 |
| Cow position: | chr27:1536545-1536332 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 344-554 |
| Cow position: | chr27:14380679-14380466 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 344-554 |
| Cow position: | chr27:27279090-27278873 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 344-561 |
| Cow position: | chr27:30036247-30036024 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 344-571 |
| Cow position: | chr27:16787922-16788154 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 76 |
| Conread position: | 344-594 |
| Cow position: | chr27:1189038-1188780 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 140, 76 |
| Conread position: | 344-594 |
| Cow position: | chr27:3990424-3990686 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 344-594 |
| Cow position: | chr27:4982748-4982486 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 104 |
| Conread position: | 344-594 |
| Cow position: | chr27:8291217-8290959 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 344-594 |
| Cow position: | chr27:11481307-11481045 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 142, 96 |
| Conread position: | 344-594 |
| Cow position: | chr27:13182909-13183149 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 344-594 |
| Cow position: | chr27:15033515-15033777 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr27:15633967-15634228 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 344-594 |
| Cow position: | chr27:15697719-15697464 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 141, 39 |
| Conread position: | 344-594 |
| Cow position: | chr27:21451819-21451559 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 344-594 |
| Cow position: | chr27:25800835-25801091 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 184, 107 |
| Conread position: | 344-594 |
| Cow position: | chr27:25971224-25971487 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 344-594 |
| Cow position: | chr27:26330308-26330046 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 344-594 |
| Cow position: | chr27:26552018-26552269 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 184, 73 |
| Conread position: | 344-594 |
| Cow position: | chr27:27291769-27291503 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 109 |
| Conread position: | 345-528 |
| Cow position: | chr27:21350222-21350040 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 111 |
| Conread position: | 345-592 |
| Cow position: | chr27:26785192-26784938 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 345-594 |
| Cow position: | chr27:165544-165805 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 345-594 |
| Cow position: | chr27:2001220-2000960 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 345-594 |
| Cow position: | chr27:4331361-4331626 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 345-594 |
| Cow position: | chr27:5983655-5983916 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 345-594 |
| Cow position: | chr27:12006523-12006262 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr27:13309019-13308758 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-594 |
| Cow position: | chr27:13353681-13353420 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr27:14297582-14297321 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr27:16031022-16031283 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 345-594 |
| Cow position: | chr27:19424002-19424263 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 345-594 |
| Cow position: | chr27:19523334-19523594 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 72 |
| Conread position: | 345-594 |
| Cow position: | chr27:22797284-22797543 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 345-595 |
| Cow position: | chr27:25799633-25799369 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 346-594 |
| Cow position: | chr27:2557619-2557877 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 105 |
| Conread position: | 347-594 |
| Cow position: | chr27:25885195-25884945 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 348-459 |
| Cow position: | chr27:30677709-30677824 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 348-594 |
| Cow position: | chr27:12282062-12281811 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 349-594 |
| Cow position: | chr27:27557172-27556920 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 350-594 |
| Cow position: | chr27:15272700-15272954 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 90 |
Show alignments to all cow chromosomes.