Cow genome map
| Conread name: | Emb1-C0005211_E05 |
| Conread position: | 1-651 |
| Cow position: | chr25:37468998-37469644 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 21-406 |
| Cow position: | chr25:13332611-13333010 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 34-404 |
| Cow position: | chr25:26939534-26939163 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 175-627 |
| Cow position: | chr25:3968771-3969238 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 229-424 |
| Cow position: | chr25:35608302-35608118 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 249-414 |
| Cow position: | chr25:20459881-20460042 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 403-651 |
| Cow position: | chr25:37687541-37687298 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 415-622 |
| Cow position: | chr25:6470590-6470382 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 432-622 |
| Cow position: | chr25:14791404-14791588 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 437-607 |
| Cow position: | chr25:30852426-30852595 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 440-650 |
| Cow position: | chr25:18490730-18490938 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 441-581 |
| Cow position: | chr25:13736749-13736591 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 441-612 |
| Cow position: | chr25:9349601-9349429 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 441-613 |
| Cow position: | chr25:18294659-18294484 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 441-613 |
| Cow position: | chr25:24572728-24572903 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 441-621 |
| Cow position: | chr25:10407762-10407581 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 441-622 |
| Cow position: | chr25:14274097-14274278 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-622 |
| Cow position: | chr25:18323697-18323515 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 441-622 |
| Cow position: | chr25:23351052-23351232 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 441-625 |
| Cow position: | chr25:36124356-36124536 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 159, 28 |
| Conread position: | 441-633 |
| Cow position: | chr25:26225383-26225192 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 441-633 |
| Cow position: | chr25:40957330-40957139 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 441-635 |
| Cow position: | chr25:8485876-8485681 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 152, 64 |
| Conread position: | 441-635 |
| Cow position: | chr25:11437146-11436951 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 441-643 |
| Cow position: | chr25:20403063-20402864 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 156, 72 |
| Conread position: | 441-644 |
| Cow position: | chr25:5514665-5514863 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 441-644 |
| Cow position: | chr25:8120433-8120633 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-644 |
| Cow position: | chr25:17994636-17994436 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 441-649 |
| Cow position: | chr25:15273346-15273557 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-649 |
| Cow position: | chr25:20394863-20395068 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 155, 74 |
| Conread position: | 441-649 |
| Cow position: | chr25:22730306-22730503 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 151, 38 |
| Conread position: | 441-650 |
| Cow position: | chr25:24136787-24136567 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 441-650 |
| Cow position: | chr25:26187875-26187667 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 155, 64 |
| Conread position: | 441-651 |
| Cow position: | chr25:1735654-1735442 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 156, 64 |
| Conread position: | 441-651 |
| Cow position: | chr25:3992446-3992664 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 441-651 |
| Cow position: | chr25:4488392-4488599 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 70 |
| Conread position: | 441-651 |
| Cow position: | chr25:6891871-6891655 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 441-651 |
| Cow position: | chr25:10643652-10643436 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 441-651 |
| Cow position: | chr25:11956483-11956699 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-651 |
| Cow position: | chr25:14225140-14224933 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 441-651 |
| Cow position: | chr25:17658271-17658483 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 441-651 |
| Cow position: | chr25:20060372-20060160 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 441-651 |
| Cow position: | chr25:23410321-23410533 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 441-651 |
| Cow position: | chr25:25827117-25827336 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 441-651 |
| Cow position: | chr25:26238525-26238741 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 441-651 |
| Cow position: | chr25:26654564-26654779 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 22 |
| Conread position: | 441-651 |
| Cow position: | chr25:30319793-30319579 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 442-649 |
| Cow position: | chr25:22530944-22531155 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 443-651 |
| Cow position: | chr25:10137765-10137968 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 151, 56 |
| Conread position: | 444-651 |
| Cow position: | chr25:13325261-13325466 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 444-651 |
| Cow position: | chr25:21245947-21245737 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 444-651 |
| Cow position: | chr25:21950785-21950996 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 446-622 |
| Cow position: | chr25:7800797-7800974 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 148, 69 |
| Conread position: | 446-622 |
| Cow position: | chr25:13569506-13569329 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 446-628 |
| Cow position: | chr25:26896701-26896883 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 446-644 |
| Cow position: | chr25:9642005-9642215 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 52, 202 |
| Conread position: | 446-649 |
| Cow position: | chr25:13720879-13720671 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 446-649 |
| Cow position: | chr25:25754334-25754135 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 446-651 |
| Cow position: | chr25:9396116-9396320 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 446-651 |
| Cow position: | chr25:17119524-17119319 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 447-622 |
| Cow position: | chr25:20069386-20069558 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 447-650 |
| Cow position: | chr25:16922130-16921921 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 447-651 |
| Cow position: | chr25:20496202-20496405 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 447-651 |
| Cow position: | chr25:38569932-38569728 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 449-612 |
| Cow position: | chr25:9634587-9634747 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 143, 56 |
| Conread position: | 449-622 |
| Cow position: | chr25:7259212-7259387 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 449-651 |
| Cow position: | chr25:787936-788135 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 450-650 |
| Cow position: | chr25:20460795-20460996 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 450-651 |
| Cow position: | chr25:36037125-36036910 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 454-651 |
| Cow position: | chr25:9842674-9842874 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 51 |
| Conread position: | 462-649 |
| Cow position: | chr25:17975690-17975499 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 462-650 |
| Cow position: | chr25:6424904-6424715 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 462-651 |
| Cow position: | chr25:18564172-18564359 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 528-649 |
| Cow position: | chr25:18935134-18935004 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 532-622 |
| Cow position: | chr25:5837220-5837128 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 532-651 |
| Cow position: | chr25:28188202-28188078 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 533-651 |
| Cow position: | chr25:19679089-19679216 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 534-651 |
| Cow position: | chr25:17712282-17712401 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.