Cow genome map
| Conread name: | Emb1-C0005211_E05 |
| Conread position: | 179-651 |
| Cow position: | chr27:21349159-21349662 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 355 |
| Conread position: | 221-651 |
| Cow position: | chr27:21668597-21669039 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 199, 100 |
| Conread position: | 373-622 |
| Cow position: | chr27:18218907-18218660 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 221, 32 |
| Conread position: | 434-651 |
| Cow position: | chr27:13198211-13197997 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 438-619 |
| Cow position: | chr27:21283375-21283197 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 156, 73 |
| Conread position: | 438-650 |
| Cow position: | chr27:15866522-15866309 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 91, 67 |
| Conread position: | 440-651 |
| Cow position: | chr27:20092323-20092533 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 441-582 |
| Cow position: | chr27:26653603-26653463 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-595 |
| Cow position: | chr27:26856913-26857064 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 441-613 |
| Cow position: | chr27:20828409-20828581 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-619 |
| Cow position: | chr27:23502759-23502583 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 441-620 |
| Cow position: | chr27:10582661-10582481 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 441-622 |
| Cow position: | chr27:427417-427242 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 148, 54 |
| Conread position: | 441-622 |
| Cow position: | chr27:1903361-1903179 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 64 |
| Conread position: | 441-622 |
| Cow position: | chr27:7289811-7289993 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 441-622 |
| Cow position: | chr27:9090503-9090685 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 441-622 |
| Cow position: | chr27:10579811-10579993 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 441-622 |
| Cow position: | chr27:16984085-16983905 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-627 |
| Cow position: | chr27:23452772-23452591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 156, 46 |
| Conread position: | 441-632 |
| Cow position: | chr27:2298710-2298518 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-633 |
| Cow position: | chr27:23595568-23595378 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 441-636 |
| Cow position: | chr27:27728620-27728419 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 441-642 |
| Cow position: | chr27:29341246-29341456 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 441-645 |
| Cow position: | chr27:1353893-1353685 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 441-645 |
| Cow position: | chr27:26545625-26545831 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-647 |
| Cow position: | chr27:491185-490976 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 441-648 |
| Cow position: | chr27:15927070-15926859 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 441-649 |
| Cow position: | chr27:11255811-11255600 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 441-649 |
| Cow position: | chr27:13977092-13977310 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 441-649 |
| Cow position: | chr27:20066064-20066271 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 156, 113 |
| Conread position: | 441-649 |
| Cow position: | chr27:26223971-26224176 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 441-649 |
| Cow position: | chr27:27449139-27449347 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 441-650 |
| Cow position: | chr27:732861-732657 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 152, 58 |
| Conread position: | 441-650 |
| Cow position: | chr27:21393209-21393416 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 441-650 |
| Cow position: | chr27:22394467-22394253 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 153, 58 |
| Conread position: | 441-651 |
| Cow position: | chr27:536751-536543 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 69 |
| Conread position: | 441-651 |
| Cow position: | chr27:4664770-4664556 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 441-651 |
| Cow position: | chr27:4673313-4673103 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 153, 58 |
| Conread position: | 441-651 |
| Cow position: | chr27:8291712-8291918 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 68 |
| Conread position: | 441-651 |
| Cow position: | chr27:15871460-15871247 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 441-651 |
| Cow position: | chr27:16620286-16620072 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 441-651 |
| Cow position: | chr27:18544296-18544083 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 441-651 |
| Cow position: | chr27:22440440-22440221 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 441-651 |
| Cow position: | chr27:26427830-26428048 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 441-651 |
| Cow position: | chr27:27040895-27040692 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 115, 53 |
| Conread position: | 441-651 |
| Cow position: | chr27:27141890-27141678 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 441-651 |
| Cow position: | chr27:30868442-30868649 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 160, 74 |
| Conread position: | 441-651 |
| Cow position: | chr27:31230797-31231009 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 442-622 |
| Cow position: | chr27:6454510-6454331 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 442-651 |
| Cow position: | chr27:18922747-18922535 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 444-622 |
| Cow position: | chr27:11535803-11535980 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 444-622 |
| Cow position: | chr27:12191154-12191333 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 444-622 |
| Cow position: | chr27:30388921-30389101 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 444-637 |
| Cow position: | chr27:24999441-24999633 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 61 |
| Conread position: | 445-622 |
| Cow position: | chr27:30177274-30177458 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 446-622 |
| Cow position: | chr27:13317672-13317838 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 446-625 |
| Cow position: | chr27:15342839-15343012 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 148, 65 |
| Conread position: | 446-626 |
| Cow position: | chr27:15867680-15867504 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 446-644 |
| Cow position: | chr27:16787125-16786924 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 446-645 |
| Cow position: | chr27:23632889-23632698 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 446-649 |
| Cow position: | chr27:27521711-27521912 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 446-650 |
| Cow position: | chr27:9337806-9337605 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 446-650 |
| Cow position: | chr27:24445863-24446073 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 446-651 |
| Cow position: | chr27:1768345-1768543 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 446-651 |
| Cow position: | chr27:9978119-9977912 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 446-651 |
| Cow position: | chr27:12277985-12278183 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 446-651 |
| Cow position: | chr27:25380290-25380077 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 446-651 |
| Cow position: | chr27:30561209-30560997 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 447-650 |
| Cow position: | chr27:22418475-22418683 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 447-651 |
| Cow position: | chr27:13876020-13875815 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 447-651 |
| Cow position: | chr27:29831396-29831603 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 448-622 |
| Cow position: | chr27:23882074-23882257 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 448-630 |
| Cow position: | chr27:28189926-28190109 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 57 |
| Conread position: | 449-645 |
| Cow position: | chr27:29515571-29515768 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 449-651 |
| Cow position: | chr27:23070073-23070277 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 145, 50 |
| Conread position: | 449-651 |
| Cow position: | chr27:23511409-23511205 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 148, 56 |
| Conread position: | 463-649 |
| Cow position: | chr27:22723437-22723617 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 51 |
| Conread position: | 473-651 |
| Cow position: | chr27:6550717-6550541 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 475-631 |
| Cow position: | chr27:24014477-24014633 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 525-651 |
| Cow position: | chr27:26625342-26625210 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 532-651 |
| Cow position: | chr27:20553925-20553804 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 537-651 |
| Cow position: | chr27:19685511-19685627 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 89 |
Show alignments to all cow chromosomes.