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Cow genome map

           
Conread name:
           
Emb1-C0005212_G09
        

               
Conread position:
               
176-510
               

               
Cow position:
               
chr28:22132779-22133119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr28:8787531-8787750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
300-487
               

               
Cow position:
               
chr28:18370012-18369824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
300-489
               

               
Cow position:
               
chr28:26743619-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
301-435
               

               
Cow position:
               
chr28:2772707-2772845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
301-435
               

               
Cow position:
               
chr28:2898983-2899124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
301-435
               

               
Cow position:
               
chr28:8149638-8149497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
301-438
               

               
Cow position:
               
chr28:27161332-27161189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
301-440
               

               
Cow position:
               
chr28:13090531-13090386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
301-491
               

               
Cow position:
               
chr28:20397376-20397173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
301-497
               

               
Cow position:
               
chr28:3406416-3406213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
301-498
               

               
Cow position:
               
chr28:15601271-15601474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
301-498
               

               
Cow position:
               
chr28:19262593-19262384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
301-498
               

               
Cow position:
               
chr28:26719337-26719530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
301-499
               

               
Cow position:
               
chr28:23578895-23579103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
301-502
               

               
Cow position:
               
chr28:3011275-3011063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
301-505
               

               
Cow position:
               
chr28:13474294-13474506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
301-510
               

               
Cow position:
               
chr28:9426356-9426141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 154
               

               
Conread position:
               
301-510
               

               
Cow position:
               
chr28:17739819-17740038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr28:5138997-5138782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr28:6283494-6283274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 169
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr28:8304241-8304458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr28:21046582-21046372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
301-515
               

               
Cow position:
               
chr28:26826217-26826441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
301-517
               

               
Cow position:
               
chr28:11987168-11987382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
301-517
               

               
Cow position:
               
chr28:12055406-12055620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
301-517
               

               
Cow position:
               
chr28:25700869-25700651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
301-521
               

               
Cow position:
               
chr28:19015710-19015924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr28:3143881-3143657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr28:5630092-5630325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr28:7964674-7964456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr28:8827159-8827390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 155
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr28:10606631-10606414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
301-525
               

               
Cow position:
               
chr28:4307903-4307665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 155
               

               
Conread position:
               
301-525
               

               
Cow position:
               
chr28:18797314-18797534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
302-491
               

               
Cow position:
               
chr28:21363742-21363933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 148
               

               
Conread position:
               
302-511
               

               
Cow position:
               
chr28:2279594-2279390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chr28:5441901-5441698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
303-512
               

               
Cow position:
               
chr28:8291425-8291624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
303-523
               

               
Cow position:
               
chr28:7132091-7131869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 147
               

               
Conread position:
               
303-525
               

               
Cow position:
               
chr28:11743823-11743602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
303-525
               

               
Cow position:
               
chr28:11866669-11866440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
303-525
               

               
Cow position:
               
chr28:13356371-13356138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 155
               

               
Conread position:
               
304-496
               

               
Cow position:
               
chr28:27721699-27721894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chr28:659290-659088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
305-440
               

               
Cow position:
               
chr28:23047618-23047758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
305-505
               

               
Cow position:
               
chr28:17728101-17727904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
305-519
               

               
Cow position:
               
chr28:13371141-13370918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
305-524
               

               
Cow position:
               
chr28:4163581-4163354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
307-507
               

               
Cow position:
               
chr28:3423785-3423986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
307-524
               

               
Cow position:
               
chr28:30293589-30293358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
309-510
               

               
Cow position:
               
chr28:4643760-4643559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 9
               

               
Conread position:
               
309-516
               

               
Cow position:
               
chr28:13269735-13269935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
309-521
               

               
Cow position:
               
chr28:18761993-18761785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
310-491
               

               
Cow position:
               
chr28:3914727-3914898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 99
               

               
Conread position:
               
310-515
               

               
Cow position:
               
chr28:19994943-19994731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
32, 147
               

               
Conread position:
               
310-519
               

               
Cow position:
               
chr28:11815069-11814860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
311-486
               

               
Cow position:
               
chr28:555515-555684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 72
               

               
Conread position:
               
311-498
               

               
Cow position:
               
chr28:20759690-20759493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
311-513
               

               
Cow position:
               
chr28:23460157-23460357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
311-514
               

               
Cow position:
               
chr28:30922049-30921840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 142
               

               
Conread position:
               
311-515
               

               
Cow position:
               
chr28:10297860-10298056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
312-430
               

               
Cow position:
               
chr28:9418955-9418836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
312-498
               

               
Cow position:
               
chr28:4185917-4186103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 133
               

               
Conread position:
               
312-498
               

               
Cow position:
               
chr28:21765967-21766155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 138
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chr28:9099947-9100139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
312-511
               

               
Cow position:
               
chr28:26820267-26820065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
312-515
               

               
Cow position:
               
chr28:3445466-3445263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
313-412
               

               
Cow position:
               
chr28:16388920-16389018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
313-423
               

               
Cow position:
               
chr28:10247501-10247611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 95
               

               
Conread position:
               
313-440
               

               
Cow position:
               
chr28:32365856-32365986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 126
               

               
Conread position:
               
313-468
               

               
Cow position:
               
chr28:16085337-16085484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
6, 103
               

               
Conread position:
               
313-470
               

               
Cow position:
               
chr28:22630024-22630176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
313-498
               

               
Cow position:
               
chr28:3078667-3078496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
313-510
               

               
Cow position:
               
chr28:27445560-27445365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 135
               

               
Conread position:
               
313-513
               

               
Cow position:
               
chr28:7008966-7008766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
6, 132
               

               
Conread position:
               
313-521
               

               
Cow position:
               
chr28:3449317-3449532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
313-521
               

               
Cow position:
               
chr28:6563886-6563671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
6, 198
               

               
Conread position:
               
313-521
               

               
Cow position:
               
chr28:7697968-7697756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
313-521
               

               
Cow position:
               
chr28:20046567-20046765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
313-524
               

               
Cow position:
               
chr28:8716375-8716157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 142
               

               
Conread position:
               
313-525
               

               
Cow position:
               
chr28:11059513-11059716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
313-525
               

               
Cow position:
               
chr28:19128161-19127944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
313-526
               

               
Cow position:
               
chr28:13245573-13245788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
6, 197
               

               
Conread position:
               
314-505
               

               
Cow position:
               
chr28:17680635-17680831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
5, 137
               

               
Conread position:
               
315-462
               

               
Cow position:
               
chr28:8167340-8167190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chr28:10958818-10959010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
316-501
               

               
Cow position:
               
chr28:12933713-12933533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
316-516
               

               
Cow position:
               
chr28:6935163-6934961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 188
               

               
Conread position:
               
316-521
               

               
Cow position:
               
chr28:3678379-3678584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
182, 7
               

               
Conread position:
               
317-498
               

               
Cow position:
               
chr28:7413676-7413863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
317-501
               

               
Cow position:
               
chr28:5273413-5273224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
317-510
               

               
Cow position:
               
chr28:10480797-10480591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
317-512
               

               
Cow position:
               
chr28:11562227-11562030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
120, 7
               

               
Conread position:
               
317-513
               

               
Cow position:
               
chr28:7144815-7145012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
317-515
               

               
Cow position:
               
chr28:1655077-1654876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
317-523
               

               
Cow position:
               
chr28:1383262-1383046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
318-433
               

               
Cow position:
               
chr28:30081706-30081592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
318-434
               

               
Cow position:
               
chr28:20313295-20313411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
318-438
               

               
Cow position:
               
chr28:25763040-25763159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
318-490
               

               
Cow position:
               
chr28:4045865-4046036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
318-490
               

               
Cow position:
               
chr28:24706915-24707091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
131, 122
               

               
Conread position:
               
318-496
               

               
Cow position:
               
chr28:12672447-12672263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
73, 133
               

               
Conread position:
               
318-496
               

               
Cow position:
               
chr28:17656437-17656614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr28:6059452-6059271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
151, 118
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr28:8259646-8259832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 133
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr28:10890717-10890542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
318-502
               

               
Cow position:
               
chr28:24996595-24996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
318-502
               

               
Cow position:
               
chr28:27218341-27218529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
318-505
               

               
Cow position:
               
chr28:19564210-19564028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
318-509
               

               
Cow position:
               
chr28:20173857-20174049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr28:7644758-7644957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr28:10767395-10767595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr28:12973899-12974095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 132
               

               
Conread position:
               
318-510
               

               
Cow position:
               
chr28:19216840-19217024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
318-512
               

               
Cow position:
               
chr28:11398779-11398580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
112, 132
               

               
Conread position:
               
318-515
               

               
Cow position:
               
chr28:10196847-10196655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
318-515
               

               
Cow position:
               
chr28:11827706-11827905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
318-516
               

               
Cow position:
               
chr28:4881222-4881033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
318-517
               

               
Cow position:
               
chr28:10845126-10845321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
318-520
               

               
Cow position:
               
chr28:33884420-33884625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
318-521
               

               
Cow position:
               
chr28:4022691-4022894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
113, 157
               

               
Conread position:
               
318-521
               

               
Cow position:
               
chr28:4937224-4937017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 138
               

               
Conread position:
               
318-524
               

               
Cow position:
               
chr28:117745-117536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
318-524
               

               
Cow position:
               
chr28:2825437-2825645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
123, 171
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:5144503-5144288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
119, 208
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:5235899-5236103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:7014471-7014682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:15362597-15362804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 131
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:32014802-32015012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
109, 133
               

               
Conread position:
               
318-525
               

               
Cow position:
               
chr28:34230246-34230456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 130
               

               
Conread position:
               
318-526
               

               
Cow position:
               
chr28:751245-751458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
318-526
               

               
Cow position:
               
chr28:4823622-4823826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 82
               

               
Conread position:
               
318-526
               

               
Cow position:
               
chr28:25973557-25973767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
119, 186
               

               
Conread position:
               
320-515
               

               
Cow position:
               
chr28:21103807-21103605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
321-515
               

               
Cow position:
               
chr28:4282471-4282274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
321-515
               

               
Cow position:
               
chr28:5199845-5200042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 129
               

               
Conread position:
               
321-525
               

               
Cow position:
               
chr28:8681407-8681211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
322-498
               

               
Cow position:
               
chr28:13941704-13941540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
322-498
               

               
Cow position:
               
chr28:22308663-22308844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
322-512
               

               
Cow position:
               
chr28:32372269-32372449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
322-515
               

               
Cow position:
               
chr28:8358919-8359117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
323-435
               

               
Cow position:
               
chr28:9430703-9430592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
323-470
               

               
Cow position:
               
chr28:11559609-11559461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
323-477
               

               
Cow position:
               
chr28:26055503-26055657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 122
               

               
Conread position:
               
323-490
               

               
Cow position:
               
chr28:6975264-6975426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
323-490
               

               
Cow position:
               
chr28:11585179-11585017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
323-490
               

               
Cow position:
               
chr28:14998090-14998256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 120
               

               
Conread position:
               
323-491
               

               
Cow position:
               
chr28:17071360-17071533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
323-491
               

               
Cow position:
               
chr28:18608345-18608172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
323-496
               

               
Cow position:
               
chr28:6321840-6322017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
323-497
               

               
Cow position:
               
chr28:4073992-4074176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
323-498
               

               
Cow position:
               
chr28:5609894-5609718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
323-498
               

               
Cow position:
               
chr28:20968557-20968376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
323-498
               

               
Cow position:
               
chr28:23530897-23531063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
323-502
               

               
Cow position:
               
chr28:3137566-3137757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
323-505
               

               
Cow position:
               
chr28:4013107-4013289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
107, 126
               

               
Conread position:
               
323-505
               

               
Cow position:
               
chr28:7619127-7618953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
323-510
               

               
Cow position:
               
chr28:8898067-8898265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
106, 85
               

               
Conread position:
               
323-513
               

               
Cow position:
               
chr28:5650714-5650530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
323-513
               

               
Cow position:
               
chr28:12991165-12991349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr28:4884233-4884039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 130
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr28:11411511-11411323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr28:12598362-12598551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr28:20124807-20124996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr28:22085519-22085330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
323-516
               

               
Cow position:
               
chr28:5673898-5674089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 107
               

               
Conread position:
               
323-517
               

               
Cow position:
               
chr28:19394898-19395081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
323-519
               

               
Cow position:
               
chr28:5684726-5684919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 85
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr28:5817865-5818061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr28:7885053-7885257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 110
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr28:11346464-11346268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr28:19038996-19038794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
99, 125
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr28:1532030-1532233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
110, 126
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr28:4070992-4071183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
323-525
               

               
Cow position:
               
chr28:2892275-2892483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 134
               

               
Conread position:
               
323-525
               

               
Cow position:
               
chr28:3484603-3484811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
323-525
               

               
Cow position:
               
chr28:4101545-4101739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
323-525
               

               
Cow position:
               
chr28:10588998-10588805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 73
               

               
Conread position:
               
323-525
               

               
Cow position:
               
chr28:26982715-26982512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 185
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr28:3023890-3023689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr28:5236581-5236365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr28:10203142-10203336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr28:29416693-29416501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr28:33561388-33561596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
324-434
               

               
Cow position:
               
chr28:22321443-22321552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
324-469
               

               
Cow position:
               
chr28:2819799-2819943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr28:11451468-11451313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
324-496
               

               
Cow position:
               
chr28:4870781-4870598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 132
               

               
Conread position:
               
324-505
               

               
Cow position:
               
chr28:23410301-23410127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
324-506
               

               
Cow position:
               
chr28:26784217-26784048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
324-507
               

               
Cow position:
               
chr28:17949089-17948908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr28:9740490-9740670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 115
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr28:21868481-21868674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
88, 126
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr28:23728275-23728095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
324-521
               

               
Cow position:
               
chr28:21844981-21845172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
324-525
               

               
Cow position:
               
chr28:13527218-13527423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
324-526
               

               
Cow position:
               
chr28:8347755-8347961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 129
               

               
Conread position:
               
325-492
               

               
Cow position:
               
chr28:13160521-13160349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 128
               

               
Conread position:
               
325-497
               

               
Cow position:
               
chr28:10252892-10252716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
325-514
               

               
Cow position:
               
chr28:3726184-3725992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
325-521
               

               
Cow position:
               
chr28:21207343-21207157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
325-524
               

               
Cow position:
               
chr28:118634-118836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
325-524
               

               
Cow position:
               
chr28:11798754-11798551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
325-525
               

               
Cow position:
               
chr28:12628761-12628961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
108, 128
               

               
Conread position:
               
327-515
               

               
Cow position:
               
chr28:21744742-21744930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
186, 117
               

               
Conread position:
               
328-505
               

               
Cow position:
               
chr28:30746702-30746531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr28:20281786-20281960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
328-513
               

               
Cow position:
               
chr28:28765875-28765691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
113, 149
               

               
Conread position:
               
328-525
               

               
Cow position:
               
chr28:11239292-11239088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 157
               

               
Conread position:
               
328-526
               

               
Cow position:
               
chr28:13133660-13133863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 175
               

               
Conread position:
               
329-475
               

               
Cow position:
               
chr28:30303170-30303031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
329-484
               

               
Cow position:
               
chr28:16243585-16243436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
329-489
               

               
Cow position:
               
chr28:3729990-3729829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 121
               

               
Conread position:
               
329-498
               

               
Cow position:
               
chr28:18928938-18928764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
329-498
               

               
Cow position:
               
chr28:24672294-24672468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
329-498
               

               
Cow position:
               
chr28:34830184-34830354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 17
               

               
Conread position:
               
329-512
               

               
Cow position:
               
chr28:23616436-23616617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
329-525
               

               
Cow position:
               
chr28:11759534-11759337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
111, 90
               

               
Conread position:
               
329-525
               

               
Cow position:
               
chr28:29500429-29500637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
330-488
               

               
Cow position:
               
chr28:5188399-5188240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
330-491
               

               
Cow position:
               
chr28:26269416-26269592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
330-497
               

               
Cow position:
               
chr28:4866544-4866379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
330-516
               

               
Cow position:
               
chr28:10762925-10763105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
331-498
               

               
Cow position:
               
chr28:24646622-24646783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
331-510
               

               
Cow position:
               
chr28:18791070-18791244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
333-435
               

               
Cow position:
               
chr28:2090564-2090665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
333-488
               

               
Cow position:
               
chr28:10855685-10855531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
333-491
               

               
Cow position:
               
chr28:19118002-19118165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
94, 117
               

               
Conread position:
               
333-520
               

               
Cow position:
               
chr28:24698723-24698913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
104, 117
               

               
Conread position:
               
334-490
               

               
Cow position:
               
chr28:16879607-16879760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
334-498
               

               
Cow position:
               
chr28:30902160-30902321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
334-505
               

               
Cow position:
               
chr28:16370049-16369883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
334-511
               

               
Cow position:
               
chr28:9109250-9109423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
334-512
               

               
Cow position:
               
chr28:8936184-8936360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
334-515
               

               
Cow position:
               
chr28:16919134-16918955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
334-525
               

               
Cow position:
               
chr28:5254908-5255094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
334-526
               

               
Cow position:
               
chr28:7132348-7132153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 175
               

               
Conread position:
               
335-436
               

               
Cow position:
               
chr28:25518729-25518629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
335-505
               

               
Cow position:
               
chr28:34877945-34877765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
335-511
               

               
Cow position:
               
chr28:5437050-5436874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
335-516
               

               
Cow position:
               
chr28:26868116-26867937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
336-435
               

               
Cow position:
               
chr28:24674505-24674604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
336-525
               

               
Cow position:
               
chr28:6301117-6301311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
93, 114
               

               
Conread position:
               
337-505
               

               
Cow position:
               
chr28:26960872-26960706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
338-517
               

               
Cow position:
               
chr28:26304102-26304285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
338-523
               

               
Cow position:
               
chr28:3759028-3759221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 176
               

               
Conread position:
               
339-515
               

               
Cow position:
               
chr28:27787603-27787782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
340-515
               

               
Cow position:
               
chr28:16200703-16200524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
340-521
               

               
Cow position:
               
chr28:11016450-11016628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
159, 41
               

               
Conread position:
               
340-526
               

               
Cow position:
               
chr28:17738113-17737921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
343-455
               

               
Cow position:
               
chr28:24726394-24726283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
344-498
               

               
Cow position:
               
chr28:16857063-16856906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 107
               

               
Conread position:
               
344-507
               

               
Cow position:
               
chr28:8656122-8655956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
344-515
               

               
Cow position:
               
chr28:16252361-16252191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
344-524
               

               
Cow position:
               
chr28:9639695-9639875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
97, 5
               

               
Conread position:
               
344-525
               

               
Cow position:
               
chr28:17620317-17620133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
345-498
               

               
Cow position:
               
chr28:7503923-7504081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
345-515
               

               
Cow position:
               
chr28:4783222-4783382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
345-515
               

               
Cow position:
               
chr28:12400280-12400458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
345-524
               

               
Cow position:
               
chr28:21118722-21118906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
349-505
               

               
Cow position:
               
chr28:3494404-3494567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 159
               

               
Conread position:
               
349-510
               

               
Cow position:
               
chr28:5769916-5770070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
350-525
               

               
Cow position:
               
chr28:1646118-1645936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
352-497
               

               
Cow position:
               
chr28:15295288-15295437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
352-498
               

               
Cow position:
               
chr28:4588370-4588514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
352-498
               

               
Cow position:
               
chr28:21263209-21263354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
352-513
               

               
Cow position:
               
chr28:16159819-16159655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
353-515
               

               
Cow position:
               
chr28:14657766-14657931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 151
               

               
Conread position:
               
356-498
               

               
Cow position:
               
chr28:7523360-7523215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr28:24767460-24767618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
356-510
               

               
Cow position:
               
chr28:3311168-3311010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 148
               

               
Conread position:
               
356-520
               

               
Cow position:
               
chr28:13174500-13174333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 157
               

               
Conread position:
               
356-525
               

               
Cow position:
               
chr28:7750960-7750794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
357-510
               

               
Cow position:
               
chr28:22278575-22278413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
357-517
               

               
Cow position:
               
chr28:17354594-17354431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
362-468
               

               
Cow position:
               
chr28:7577121-7577226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
362-510
               

               
Cow position:
               
chr28:18740430-18740285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
363-505
               

               
Cow position:
               
chr28:22170217-22170075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
368-502
               

               
Cow position:
               
chr28:8165148-8165009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
368-515
               

               
Cow position:
               
chr28:5428686-5428544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
380-525
               

               
Cow position:
               
chr28:16964887-16964738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
391-525
               

               
Cow position:
               
chr28:6124171-6124033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 117
               
Show alignments to all cow chromosomes.