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Cow genome map

           
Conread name:
           
Emb1-C0005215_B10
        

               
Conread position:
               
74-423
               

               
Cow position:
               
chr21:44514991-44515339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
76-491
               

               
Cow position:
               
chr21:9710987-9710563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 186
               

               
Conread position:
               
77-324
               

               
Cow position:
               
chr21:20162264-20162512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 136
               

               
Conread position:
               
77-332
               

               
Cow position:
               
chr21:14125792-14126030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
77-360
               

               
Cow position:
               
chr21:23683279-23683560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 151
               

               
Conread position:
               
77-376
               

               
Cow position:
               
chr21:36297208-36297518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
77-376
               

               
Cow position:
               
chr21:42540491-42540196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 131
               

               
Conread position:
               
77-377
               

               
Cow position:
               
chr21:23192789-23192485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chr21:31691210-31691516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 89
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chr21:33263580-33263875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 79
               

               
Conread position:
               
77-383
               

               
Cow position:
               
chr21:37479688-37479988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 62
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr21:2367069-2367373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
100, 169
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr21:12616871-12617174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
77-390
               

               
Cow position:
               
chr21:17511508-17511818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 38
               

               
Conread position:
               
77-423
               

               
Cow position:
               
chr21:16188066-16187732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
77-490
               

               
Cow position:
               
chr21:30990539-30990119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 165
               

               
Conread position:
               
77-502
               

               
Cow position:
               
chr21:395607-396047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 76
               

               
Conread position:
               
77-523
               

               
Cow position:
               
chr21:30250476-30250004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
77-585
               

               
Cow position:
               
chr21:11645256-11644704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 465
               

               
Conread position:
               
77-585
               

               
Cow position:
               
chr21:29069599-29069061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
77-586
               

               
Cow position:
               
chr21:7672862-7673376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 176
               

               
Conread position:
               
77-588
               

               
Cow position:
               
chr21:641313-641849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 148
               

               
Conread position:
               
77-591
               

               
Cow position:
               
chr21:19957959-19958484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
296, 51
               

               
Conread position:
               
77-597
               

               
Cow position:
               
chr21:32297773-32297234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 102
               

               
Conread position:
               
77-601
               

               
Cow position:
               
chr21:41957445-41956925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 165
               

               
Conread position:
               
77-604
               

               
Cow position:
               
chr21:34653816-34654351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 24
               

               
Conread position:
               
77-607
               

               
Cow position:
               
chr21:33983081-33982530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 226
               

               
Conread position:
               
77-607
               

               
Cow position:
               
chr21:37299194-37299744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 173
               

               
Conread position:
               
78-317
               

               
Cow position:
               
chr21:20109102-20108861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr21:31158985-31159246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr21:35897891-35897649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
78-335
               

               
Cow position:
               
chr21:24607115-24607376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
78-340
               

               
Cow position:
               
chr21:4905237-4904976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 92
               

               
Conread position:
               
78-358
               

               
Cow position:
               
chr21:13703956-13703674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
78-376
               

               
Cow position:
               
chr21:12961183-12960873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
78-376
               

               
Cow position:
               
chr21:24222811-24222510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
78-377
               

               
Cow position:
               
chr21:725160-724857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
78-377
               

               
Cow position:
               
chr21:24858041-24858342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
78-379
               

               
Cow position:
               
chr21:39401330-39401625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 103
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr21:5344391-5344690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 106
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr21:17479114-17479404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 96
               

               
Conread position:
               
78-381
               

               
Cow position:
               
chr21:13128366-13128066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
78-381
               

               
Cow position:
               
chr21:32535708-32536007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
78-382
               

               
Cow position:
               
chr21:2679289-2679588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
78-382
               

               
Cow position:
               
chr21:2786062-2785743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
78-382
               

               
Cow position:
               
chr21:18494708-18495003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr21:11639751-11640059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr21:25127340-25127637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr21:30849214-30848912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
78-390
               

               
Cow position:
               
chr21:17714043-17714360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 209
               

               
Conread position:
               
78-391
               

               
Cow position:
               
chr21:7564592-7564272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 123
               

               
Conread position:
               
78-422
               

               
Cow position:
               
chr21:7132732-7132384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 208
               

               
Conread position:
               
78-471
               

               
Cow position:
               
chr21:4998755-4998346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 166
               

               
Conread position:
               
78-487
               

               
Cow position:
               
chr21:42023865-42024269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
78-499
               

               
Cow position:
               
chr21:28442464-28442909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 192
               

               
Conread position:
               
78-516
               

               
Cow position:
               
chr21:32237030-32237473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
78-516
               

               
Cow position:
               
chr21:33209929-33210379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
78-523
               

               
Cow position:
               
chr21:33562744-33563203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
78-541
               

               
Cow position:
               
chr21:18932222-18932682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
227, 105
               

               
Conread position:
               
78-541
               

               
Cow position:
               
chr21:19974478-19974941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
78-583
               

               
Cow position:
               
chr21:23672476-23673005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
78-586
               

               
Cow position:
               
chr21:11740401-11739858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
78-586
               

               
Cow position:
               
chr21:38120833-38121342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
78-588
               

               
Cow position:
               
chr21:643067-643585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 95
               

               
Conread position:
               
78-589
               

               
Cow position:
               
chr21:21216411-21215891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 176
               

               
Conread position:
               
78-589
               

               
Cow position:
               
chr21:37706687-37706146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
78-598
               

               
Cow position:
               
chr21:46973405-46972890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
56, 174
               

               
Conread position:
               
78-603
               

               
Cow position:
               
chr21:81800-82338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 440
               

               
Conread position:
               
78-607
               

               
Cow position:
               
chr21:48108124-48107601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
78-614
               

               
Cow position:
               
chr21:20262604-20262058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 170
               

               
Conread position:
               
78-614
               

               
Cow position:
               
chr21:41974649-41974072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 422
               

               
Conread position:
               
79-330
               

               
Cow position:
               
chr21:38691923-38692166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
79-370
               

               
Cow position:
               
chr21:17417032-17416739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 189
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr21:20925774-20925469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
79-394
               

               
Cow position:
               
chr21:40058536-40058852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 181
               

               
Conread position:
               
79-438
               

               
Cow position:
               
chr21:18850495-18850143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 164
               

               
Conread position:
               
79-613
               

               
Cow position:
               
chr21:6833783-6834339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 166
               

               
Conread position:
               
80-335
               

               
Cow position:
               
chr21:33419984-33419736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
34, 146
               

               
Conread position:
               
80-361
               

               
Cow position:
               
chr21:17174879-17175164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
216, 109
               

               
Conread position:
               
80-374
               

               
Cow position:
               
chr21:28443629-28443350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 63
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chr21:19363718-19363428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 77
               

               
Conread position:
               
80-382
               

               
Cow position:
               
chr21:5392806-5392504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
80-392
               

               
Cow position:
               
chr21:393753-394063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 254
               

               
Conread position:
               
80-411
               

               
Cow position:
               
chr21:47802530-47802195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 166
               

               
Conread position:
               
80-582
               

               
Cow position:
               
chr21:29214423-29213900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
80-602
               

               
Cow position:
               
chr21:937784-938300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 58
               

               
Conread position:
               
80-616
               

               
Cow position:
               
chr21:25344610-25345159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 156
               

               
Conread position:
               
81-390
               

               
Cow position:
               
chr21:10727014-10727319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 188
               

               
Conread position:
               
83-349
               

               
Cow position:
               
chr21:21968053-21968318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
83-382
               

               
Cow position:
               
chr21:34391231-34390941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
83-611
               

               
Cow position:
               
chr21:14464300-14464874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
84-535
               

               
Cow position:
               
chr21:33350481-33350957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
84-603
               

               
Cow position:
               
chr21:44565969-44565451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
85-349
               

               
Cow position:
               
chr21:18935503-18935760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
85-523
               

               
Cow position:
               
chr21:13897930-13898365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 62
               

               
Conread position:
               
86-394
               

               
Cow position:
               
chr21:3585618-3585323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
88-385
               

               
Cow position:
               
chr21:21223024-21223321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
57, 256
               

               
Conread position:
               
88-449
               

               
Cow position:
               
chr21:24130821-24131196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 165
               

               
Conread position:
               
90-385
               

               
Cow position:
               
chr21:23150277-23149985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
90-615
               

               
Cow position:
               
chr21:44826133-44825583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 30
               

               
Conread position:
               
101-611
               

               
Cow position:
               
chr21:42905622-42905114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
105-382
               

               
Cow position:
               
chr21:23322324-23322045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 76
               

               
Conread position:
               
105-395
               

               
Cow position:
               
chr21:5636964-5636672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 144
               

               
Conread position:
               
107-612
               

               
Cow position:
               
chr21:38917977-38918493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
111-591
               

               
Cow position:
               
chr21:4098635-4099115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 144
               

               
Conread position:
               
112-615
               

               
Cow position:
               
chr21:27569400-27568865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr21:41878241-41878517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
113-587
               

               
Cow position:
               
chr21:15445314-15444818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 157
               

               
Conread position:
               
123-349
               

               
Cow position:
               
chr21:8351526-8351306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
123-500
               

               
Cow position:
               
chr21:42348903-42348518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 324
               

               
Conread position:
               
128-381
               

               
Cow position:
               
chr21:28626021-28626273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
128-491
               

               
Cow position:
               
chr21:48251250-48250881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 174
               

               
Conread position:
               
128-584
               

               
Cow position:
               
chr21:24797475-24797916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 53
               

               
Conread position:
               
131-604
               

               
Cow position:
               
chr21:30592515-30592034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 31
               

               
Conread position:
               
135-644
               

               
Cow position:
               
chr21:23535500-23536032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
138-580
               

               
Cow position:
               
chr21:47465333-47464862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
141-477
               

               
Cow position:
               
chr21:45330815-45330452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
143-504
               

               
Cow position:
               
chr21:1058872-1059256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
143-526
               

               
Cow position:
               
chr21:29484779-29485181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
143-591
               

               
Cow position:
               
chr21:6051301-6051773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
143-591
               

               
Cow position:
               
chr21:33791574-33791129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
143-623
               

               
Cow position:
               
chr21:13585265-13584756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
14, 481
               

               
Conread position:
               
144-379
               

               
Cow position:
               
chr21:22860798-22861030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
145-582
               

               
Cow position:
               
chr21:24598456-24598902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
145-591
               

               
Cow position:
               
chr21:45355633-45356083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
145-603
               

               
Cow position:
               
chr21:29002365-29001868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 357
               

               
Conread position:
               
146-351
               

               
Cow position:
               
chr21:17697063-17696860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
146-385
               

               
Cow position:
               
chr21:17302578-17302339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
146-516
               

               
Cow position:
               
chr21:41597613-41598006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
147-603
               

               
Cow position:
               
chr21:27521526-27521061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
148-385
               

               
Cow position:
               
chr21:31676298-31676535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
149-472
               

               
Cow position:
               
chr21:13738372-13738702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
188, 32
               

               
Conread position:
               
151-333
               

               
Cow position:
               
chr21:42465632-42465816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
151-381
               

               
Cow position:
               
chr21:17428305-17428530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 52
               

               
Conread position:
               
152-322
               

               
Cow position:
               
chr21:35897289-35897454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr21:35569579-35569346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr21:42135819-42135583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
153-505
               

               
Cow position:
               
chr21:21077134-21077492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
153-607
               

               
Cow position:
               
chr21:46242434-46241973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
154-381
               

               
Cow position:
               
chr21:31277627-31277852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
154-596
               

               
Cow position:
               
chr21:42841785-42841312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 213
               

               
Conread position:
               
156-389
               

               
Cow position:
               
chr21:10601560-10601339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
156-423
               

               
Cow position:
               
chr21:18942021-18941759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
157-592
               

               
Cow position:
               
chr21:32559545-32559102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
158-382
               

               
Cow position:
               
chr21:13365151-13365374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
159-381
               

               
Cow position:
               
chr21:13488331-13488555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
159-381
               

               
Cow position:
               
chr21:47764301-47764083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
159-385
               

               
Cow position:
               
chr21:22353419-22353193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
159-394
               

               
Cow position:
               
chr21:14452041-14452279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
161-377
               

               
Cow position:
               
chr21:18845202-18844986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
164-603
               

               
Cow position:
               
chr21:27146174-27145707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
133, 104
               

               
Conread position:
               
166-404
               

               
Cow position:
               
chr21:45375434-45375674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
166-594
               

               
Cow position:
               
chr21:17183739-17184191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
168-546
               

               
Cow position:
               
chr21:9990334-9990731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
168-586
               

               
Cow position:
               
chr21:802474-802060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
176-382
               

               
Cow position:
               
chr21:28190858-28191065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
178-385
               

               
Cow position:
               
chr21:10000912-10001112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
178-455
               

               
Cow position:
               
chr21:46860270-46859989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
170, 33
               

               
Conread position:
               
180-379
               

               
Cow position:
               
chr21:28244310-28244500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
181-526
               

               
Cow position:
               
chr21:27624547-27624902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 26
               

               
Conread position:
               
187-602
               

               
Cow position:
               
chr21:41590716-41590287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
203, 83
               

               
Conread position:
               
190-385
               

               
Cow position:
               
chr21:18800685-18800498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
192-394
               

               
Cow position:
               
chr21:24642364-24642566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
199-386
               

               
Cow position:
               
chr21:14515700-14515889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
206-382
               

               
Cow position:
               
chr21:23980327-23980146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
206-603
               

               
Cow position:
               
chr21:48234299-48233896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
208-381
               

               
Cow position:
               
chr21:12462109-12461937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
210-392
               

               
Cow position:
               
chr21:29978899-29978716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
210-571
               

               
Cow position:
               
chr21:7825312-7824942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
219-381
               

               
Cow position:
               
chr21:17856416-17856575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
118, 81
               

               
Conread position:
               
219-588
               

               
Cow position:
               
chr21:20260448-20260032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
220-597
               

               
Cow position:
               
chr21:27810278-27810666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 177
               

               
Conread position:
               
223-598
               

               
Cow position:
               
chr21:30222218-30222617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
237-516
               

               
Cow position:
               
chr21:18041961-18041676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 213
               

               
Conread position:
               
238-535
               

               
Cow position:
               
chr21:35437575-35437274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
239-492
               

               
Cow position:
               
chr21:35354422-35354703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
248-380
               

               
Cow position:
               
chr21:10561686-10561552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
254-502
               

               
Cow position:
               
chr21:22465101-22465370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
255-598
               

               
Cow position:
               
chr21:44658487-44658836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
257-601
               

               
Cow position:
               
chr21:45906714-45906343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 244
               

               
Conread position:
               
259-497
               

               
Cow position:
               
chr21:31090511-31090260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
270-604
               

               
Cow position:
               
chr21:37014483-37014143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
274-599
               

               
Cow position:
               
chr21:44214048-44214387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
274-602
               

               
Cow position:
               
chr21:16569825-16570168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
62, 220
               

               
Conread position:
               
278-591
               

               
Cow position:
               
chr21:40266049-40266392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
22, 224
               

               
Conread position:
               
278-606
               

               
Cow position:
               
chr21:8546063-8545734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
286-614
               

               
Cow position:
               
chr21:12339575-12339909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
288-591
               

               
Cow position:
               
chr21:11779592-11779270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
288-606
               

               
Cow position:
               
chr21:8426379-8426725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 234
               

               
Conread position:
               
300-599
               

               
Cow position:
               
chr21:41522457-41522136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
36, 279
               

               
Conread position:
               
310-614
               

               
Cow position:
               
chr21:45835442-45835098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
27, 226
               

               
Conread position:
               
321-585
               

               
Cow position:
               
chr21:14126259-14126534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
17, 191
               

               
Conread position:
               
327-591
               

               
Cow position:
               
chr21:11678310-11678053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
360-587
               

               
Cow position:
               
chr21:36763091-36763326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
369-586
               

               
Cow position:
               
chr21:20163746-20163971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 134
               

               
Conread position:
               
369-604
               

               
Cow position:
               
chr21:6851211-6851443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
47, 122
               

               
Conread position:
               
369-619
               

               
Cow position:
               
chr21:12354656-12354403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
370-588
               

               
Cow position:
               
chr21:21615821-21616041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
372-598
               

               
Cow position:
               
chr21:7169728-7169962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 133
               

               
Conread position:
               
379-620
               

               
Cow position:
               
chr21:9418106-9417848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 249
               

               
Conread position:
               
380-511
               

               
Cow position:
               
chr21:31691535-31691670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
380-526
               

               
Cow position:
               
chr21:11057828-11057676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
380-526
               

               
Cow position:
               
chr21:19360126-19359973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
380-559
               

               
Cow position:
               
chr21:829158-828977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
380-584
               

               
Cow position:
               
chr21:8349381-8349583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
380-588
               

               
Cow position:
               
chr21:17252928-17252712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
380-598
               

               
Cow position:
               
chr21:71637-71859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
380-599
               

               
Cow position:
               
chr21:30980527-30980282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
380-600
               

               
Cow position:
               
chr21:22014240-22014467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
380-600
               

               
Cow position:
               
chr21:42135566-42135341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
380-603
               

               
Cow position:
               
chr21:36682375-36682606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
380-603
               

               
Cow position:
               
chr21:47719249-47719025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
380-607
               

               
Cow position:
               
chr21:742337-742556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
181, 39
               

               
Conread position:
               
380-610
               

               
Cow position:
               
chr21:24858365-24858604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
381-591
               

               
Cow position:
               
chr21:30835417-30835634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
381-591
               

               
Cow position:
               
chr21:36508289-36508498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
381-592
               

               
Cow position:
               
chr21:38449394-38449182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
381-596
               

               
Cow position:
               
chr21:25014975-25014767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
383-601
               

               
Cow position:
               
chr21:16498572-16498793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
388-582
               

               
Cow position:
               
chr21:46599419-46599617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
388-583
               

               
Cow position:
               
chr21:24875410-24875612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
388-593
               

               
Cow position:
               
chr21:15012497-15012701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
388-596
               

               
Cow position:
               
chr21:25012140-25012351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
388-600
               

               
Cow position:
               
chr21:28907486-28907272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
388-610
               

               
Cow position:
               
chr21:28030347-28030565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
388-636
               

               
Cow position:
               
chr21:40820795-40820537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
390-602
               

               
Cow position:
               
chr21:41737974-41738188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
392-598
               

               
Cow position:
               
chr21:20174380-20174586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
394-605
               

               
Cow position:
               
chr21:32271991-32272212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 193
               

               
Conread position:
               
399-526
               

               
Cow position:
               
chr21:6603017-6603144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
123, 113
               

               
Conread position:
               
399-606
               

               
Cow position:
               
chr21:30938589-30938383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
400-603
               

               
Cow position:
               
chr21:19083509-19083305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
400-607
               

               
Cow position:
               
chr21:47363656-47363437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
402-590
               

               
Cow position:
               
chr21:43655783-43655970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 15
               

               
Conread position:
               
402-633
               

               
Cow position:
               
chr21:7460687-7460917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
405-610
               

               
Cow position:
               
chr21:29418650-29418860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
406-598
               

               
Cow position:
               
chr21:31659068-31658879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
406-600
               

               
Cow position:
               
chr21:28244553-28244745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
406-607
               

               
Cow position:
               
chr21:38482459-38482667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
407-578
               

               
Cow position:
               
chr21:42007378-42007213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-580
               

               
Cow position:
               
chr21:20160760-20160935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
407-597
               

               
Cow position:
               
chr21:9416334-9416516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
407-598
               

               
Cow position:
               
chr21:868840-868644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
407-600
               

               
Cow position:
               
chr21:4108859-4109053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
407-602
               

               
Cow position:
               
chr21:18568555-18568357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
407-602
               

               
Cow position:
               
chr21:34010312-34010118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
407-603
               

               
Cow position:
               
chr21:18449837-18450035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
407-603
               

               
Cow position:
               
chr21:23980098-23979899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-604
               

               
Cow position:
               
chr21:9301307-9301507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
407-604
               

               
Cow position:
               
chr21:15305215-15305012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-604
               

               
Cow position:
               
chr21:40475582-40475784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-605
               

               
Cow position:
               
chr21:16796935-16797132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 178
               

               
Conread position:
               
407-606
               

               
Cow position:
               
chr21:44724284-44724093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr21:12348849-12349052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
407-611
               

               
Cow position:
               
chr21:41621209-41621414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
407-631
               

               
Cow position:
               
chr21:22718699-22718478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
410-607
               

               
Cow position:
               
chr21:45376035-45376230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
413-586
               

               
Cow position:
               
chr21:23568318-23568488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
413-591
               

               
Cow position:
               
chr21:44251753-44251573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
414-574
               

               
Cow position:
               
chr21:8351203-8351043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
414-583
               

               
Cow position:
               
chr21:2537048-2536876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
414-588
               

               
Cow position:
               
chr21:41041035-41041213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
414-591
               

               
Cow position:
               
chr21:11182644-11182818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
414-598
               

               
Cow position:
               
chr21:745266-745444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
414-598
               

               
Cow position:
               
chr21:6291837-6292024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
414-598
               

               
Cow position:
               
chr21:13134692-13134873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
174, 93
               

               
Conread position:
               
414-598
               

               
Cow position:
               
chr21:31279347-31279527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
414-600
               

               
Cow position:
               
chr21:20153047-20153234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
414-603
               

               
Cow position:
               
chr21:1464434-1464622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
414-603
               

               
Cow position:
               
chr21:6153891-6154082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
414-606
               

               
Cow position:
               
chr21:10004794-10004599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
142, 95
               

               
Conread position:
               
414-607
               

               
Cow position:
               
chr21:42454952-42455144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
177, 96
               

               
Conread position:
               
414-608
               

               
Cow position:
               
chr21:37495855-37495657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
414-609
               

               
Cow position:
               
chr21:6713432-6713237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
414-611
               

               
Cow position:
               
chr21:27744116-27744319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
414-626
               

               
Cow position:
               
chr21:29011879-29011677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
414-633
               

               
Cow position:
               
chr21:39278206-39277981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
415-574
               

               
Cow position:
               
chr21:41287701-41287545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
415-576
               

               
Cow position:
               
chr21:17193659-17193495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
415-582
               

               
Cow position:
               
chr21:11353152-11353323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
415-594
               

               
Cow position:
               
chr21:27409640-27409467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
415-595
               

               
Cow position:
               
chr21:3177939-3178118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
415-598
               

               
Cow position:
               
chr21:14452326-14452508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
415-599
               

               
Cow position:
               
chr21:9382778-9382582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
415-601
               

               
Cow position:
               
chr21:37361150-37360961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
415-602
               

               
Cow position:
               
chr21:42144916-42145098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
415-603
               

               
Cow position:
               
chr21:45537274-45537469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
415-606
               

               
Cow position:
               
chr21:40930383-40930196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
415-608
               

               
Cow position:
               
chr21:7768530-7768711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
415-614
               

               
Cow position:
               
chr21:3135777-3135579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
416-520
               

               
Cow position:
               
chr21:22929016-22929119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
416-585
               

               
Cow position:
               
chr21:8506453-8506285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-585
               

               
Cow position:
               
chr21:8509341-8509173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-586
               

               
Cow position:
               
chr21:10264126-10264298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
416-590
               

               
Cow position:
               
chr21:22851013-22851182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
416-594
               

               
Cow position:
               
chr21:13883574-13883748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
416-605
               

               
Cow position:
               
chr21:39393841-39394032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
416-607
               

               
Cow position:
               
chr21:8431007-8430810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
417-594
               

               
Cow position:
               
chr21:40551647-40551471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
417-603
               

               
Cow position:
               
chr21:27677574-27677763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
417-615
               

               
Cow position:
               
chr21:44732949-44732750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
138, 80
               

               
Conread position:
               
418-607
               

               
Cow position:
               
chr21:8986116-8986311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
420-582
               

               
Cow position:
               
chr21:16120064-16119903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
421-614
               

               
Cow position:
               
chr21:18495319-18495506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
422-591
               

               
Cow position:
               
chr21:6041883-6042057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
422-591
               

               
Cow position:
               
chr21:12473960-12473794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
422-614
               

               
Cow position:
               
chr21:5214448-5214645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 175
               

               
Conread position:
               
422-620
               

               
Cow position:
               
chr21:40457701-40457906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
423-591
               

               
Cow position:
               
chr21:15271337-15271171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
423-594
               

               
Cow position:
               
chr21:18341319-18341490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
423-602
               

               
Cow position:
               
chr21:18056029-18055851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
423-608
               

               
Cow position:
               
chr21:38720350-38720534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
423-612
               

               
Cow position:
               
chr21:28882282-28882472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
423-616
               

               
Cow position:
               
chr21:48334692-48334492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
423-635
               

               
Cow position:
               
chr21:24757040-24757250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
426-587
               

               
Cow position:
               
chr21:41140614-41140451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
428-586
               

               
Cow position:
               
chr21:36398457-36398307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
428-601
               

               
Cow position:
               
chr21:39845699-39845881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
430-574
               

               
Cow position:
               
chr21:31258574-31258720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
430-590
               

               
Cow position:
               
chr21:37480075-37480232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
430-598
               

               
Cow position:
               
chr21:7424906-7424731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
430-600
               

               
Cow position:
               
chr21:17890410-17890581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
430-601
               

               
Cow position:
               
chr21:10009709-10009538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
430-602
               

               
Cow position:
               
chr21:31462670-31462838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
430-604
               

               
Cow position:
               
chr21:42047934-42047758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
430-614
               

               
Cow position:
               
chr21:19220690-19220504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
431-609
               

               
Cow position:
               
chr21:39319301-39319122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
432-588
               

               
Cow position:
               
chr21:8240418-8240577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
432-591
               

               
Cow position:
               
chr21:5344988-5345149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
432-633
               

               
Cow position:
               
chr21:9477273-9477472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
433-606
               

               
Cow position:
               
chr21:5789473-5789641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
435-586
               

               
Cow position:
               
chr21:17856878-17857028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
435-594
               

               
Cow position:
               
chr21:28604204-28604353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
435-604
               

               
Cow position:
               
chr21:19340119-19339948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
437-603
               

               
Cow position:
               
chr21:2787681-2787525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
437-626
               

               
Cow position:
               
chr21:44364685-44364499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
440-586
               

               
Cow position:
               
chr21:23783724-23783585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
442-597
               

               
Cow position:
               
chr21:36048303-36048139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 158
               

               
Conread position:
               
442-598
               

               
Cow position:
               
chr21:46609884-46609728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
443-592
               

               
Cow position:
               
chr21:11761684-11761831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
443-598
               

               
Cow position:
               
chr21:30368197-30368349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
443-608
               

               
Cow position:
               
chr21:42341817-42341657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 53
               

               
Conread position:
               
446-602
               

               
Cow position:
               
chr21:37479469-37479311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
112, 50
               

               
Conread position:
               
448-591
               

               
Cow position:
               
chr21:13488678-13488823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
453-598
               

               
Cow position:
               
chr21:40821764-40821620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
457-586
               

               
Cow position:
               
chr21:2904170-2904040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
457-605
               

               
Cow position:
               
chr21:42227564-42227418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
459-618
               

               
Cow position:
               
chr21:35337786-35337625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
460-608
               

               
Cow position:
               
chr21:47761579-47761425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
462-637
               

               
Cow position:
               
chr21:10014191-10014013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
477-607
               

               
Cow position:
               
chr21:35256264-35256398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               
Show alignments to all cow chromosomes.