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Cow genome map

           
Conread name:
           
Emb1-C0005215_B10
        

               
Conread position:
               
61-345
               

               
Cow position:
               
chr5:63917729-63917451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
74-377
               

               
Cow position:
               
chr5:68604541-68604850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 185
               

               
Conread position:
               
74-514
               

               
Cow position:
               
chr5:25231319-25230864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
74-603
               

               
Cow position:
               
chr5:26467310-26467867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
77-351
               

               
Cow position:
               
chr5:69099217-69099497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
77-359
               

               
Cow position:
               
chr5:12672331-12672057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 89
               

               
Conread position:
               
77-376
               

               
Cow position:
               
chr5:54405203-54404901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
77-377
               

               
Cow position:
               
chr5:55942710-55942406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
77-377
               

               
Cow position:
               
chr5:56523865-56524160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 142
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:6086871-6086564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:34638584-34638878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:50821479-50821776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 150
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chr5:9894433-9894129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
77-383
               

               
Cow position:
               
chr5:6044977-6045288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr5:5111386-5111076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 210
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr5:16206451-16206155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 83
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr5:19470492-19470187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 104
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr5:27015384-27015680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr5:34915832-34916173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 188
               

               
Conread position:
               
77-476
               

               
Cow position:
               
chr5:51357811-51357410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
77-478
               

               
Cow position:
               
chr5:20407967-20407560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 26
               

               
Conread position:
               
77-493
               

               
Cow position:
               
chr5:74003955-74003502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
78, 184
               

               
Conread position:
               
77-517
               

               
Cow position:
               
chr5:46104249-46103805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
80, 183
               

               
Conread position:
               
77-526
               

               
Cow position:
               
chr5:4166361-4166805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 164
               

               
Conread position:
               
77-544
               

               
Cow position:
               
chr5:34528255-34528726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
77-549
               

               
Cow position:
               
chr5:7193123-7193599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 161
               

               
Conread position:
               
77-554
               

               
Cow position:
               
chr5:66366225-66366700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
77-574
               

               
Cow position:
               
chr5:68718581-68719081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
77-584
               

               
Cow position:
               
chr5:27154715-27155226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
77-587
               

               
Cow position:
               
chr5:3582270-3582782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 131
               

               
Conread position:
               
77-591
               

               
Cow position:
               
chr5:64321441-64321993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
77-597
               

               
Cow position:
               
chr5:30276386-30276924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
77-598
               

               
Cow position:
               
chr5:57935422-57934882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
77-606
               

               
Cow position:
               
chr5:15363584-15364117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 61
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr5:2332834-2332565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 219
               

               
Conread position:
               
78-351
               

               
Cow position:
               
chr5:58793922-58793652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
78-372
               

               
Cow position:
               
chr5:49558854-49559153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
78-377
               

               
Cow position:
               
chr5:62827063-62826763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 179
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr5:16184784-16185081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr5:16508788-16509090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 138
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr5:34288775-34288477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
78-381
               

               
Cow position:
               
chr5:64524187-64523874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
78-382
               

               
Cow position:
               
chr5:14314215-14314521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr5:15598541-15598241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr5:46510176-46509871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 191
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr5:4797621-4797316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 172
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr5:26377972-26377669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr5:32141005-32140710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr5:65941560-65941253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
78-398
               

               
Cow position:
               
chr5:49820834-49821156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 150
               

               
Conread position:
               
78-403
               

               
Cow position:
               
chr5:30816407-30816740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 209
               

               
Conread position:
               
78-423
               

               
Cow position:
               
chr5:19813528-19813183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
78-423
               

               
Cow position:
               
chr5:32697105-32696785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
78-491
               

               
Cow position:
               
chr5:4218573-4218988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
78-491
               

               
Cow position:
               
chr5:65933237-65932812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
78-503
               

               
Cow position:
               
chr5:67212073-67212502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
78-506
               

               
Cow position:
               
chr5:64823612-64823184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
78-527
               

               
Cow position:
               
chr5:43457817-43457369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 42
               

               
Conread position:
               
78-571
               

               
Cow position:
               
chr5:26096989-26097501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 166
               

               
Conread position:
               
78-579
               

               
Cow position:
               
chr5:50599758-50600265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 104
               

               
Conread position:
               
78-581
               

               
Cow position:
               
chr5:72045954-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 167
               

               
Conread position:
               
78-584
               

               
Cow position:
               
chr5:39447843-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 178
               

               
Conread position:
               
78-585
               

               
Cow position:
               
chr5:35762982-35763469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 138
               

               
Conread position:
               
78-590
               

               
Cow position:
               
chr5:30486943-30487459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 61
               

               
Conread position:
               
78-591
               

               
Cow position:
               
chr5:61725663-61726188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
78-591
               

               
Cow position:
               
chr5:66257338-66257865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
78-591
               

               
Cow position:
               
chr5:67932772-67932235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
78-592
               

               
Cow position:
               
chr5:47756460-47757004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 426
               

               
Conread position:
               
78-598
               

               
Cow position:
               
chr5:21828548-21829102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 194
               

               
Conread position:
               
78-598
               

               
Cow position:
               
chr5:47317276-47316737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 166
               

               
Conread position:
               
78-601
               

               
Cow position:
               
chr5:3242773-3242254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 92
               

               
Conread position:
               
78-602
               

               
Cow position:
               
chr5:12323102-12322570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 59
               

               
Conread position:
               
78-603
               

               
Cow position:
               
chr5:35207953-35208506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
78-603
               

               
Cow position:
               
chr5:50722739-50723289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
78-607
               

               
Cow position:
               
chr5:16894077-16893532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 65
               

               
Conread position:
               
78-607
               

               
Cow position:
               
chr5:55176584-55177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
78-607
               

               
Cow position:
               
chr5:55233076-55232577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 25
               

               
Conread position:
               
78-608
               

               
Cow position:
               
chr5:37942101-37941559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 177
               

               
Conread position:
               
78-609
               

               
Cow position:
               
chr5:44797023-44796487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
78-609
               

               
Cow position:
               
chr5:44994353-44993790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 180
               

               
Conread position:
               
78-611
               

               
Cow position:
               
chr5:62172098-62172650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
78-614
               

               
Cow position:
               
chr5:58519707-58519163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 139
               

               
Conread position:
               
78-617
               

               
Cow position:
               
chr5:47889023-47888473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 289
               

               
Conread position:
               
79-332
               

               
Cow position:
               
chr5:3281175-3280927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 113
               

               
Conread position:
               
79-382
               

               
Cow position:
               
chr5:8821299-8821019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr5:47313166-47313489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 155
               

               
Conread position:
               
79-530
               

               
Cow position:
               
chr5:37377561-37378022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
79-582
               

               
Cow position:
               
chr5:29827746-29828270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 160
               

               
Conread position:
               
79-614
               

               
Cow position:
               
chr5:74643968-74643432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 148
               

               
Conread position:
               
80-581
               

               
Cow position:
               
chr5:65776698-65776156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
80-589
               

               
Cow position:
               
chr5:35145044-35145564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 184
               

               
Conread position:
               
80-593
               

               
Cow position:
               
chr5:66338780-66339306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
80-598
               

               
Cow position:
               
chr5:47601505-47602047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 164
               

               
Conread position:
               
83-594
               

               
Cow position:
               
chr5:43923452-43922936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 188
               

               
Conread position:
               
83-600
               

               
Cow position:
               
chr5:28927900-28927382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 342
               

               
Conread position:
               
84-385
               

               
Cow position:
               
chr5:45940915-45940615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
85-377
               

               
Cow position:
               
chr5:60519874-60520154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
86-382
               

               
Cow position:
               
chr5:72149951-72150243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr5:44583415-44583130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
86-586
               

               
Cow position:
               
chr5:45845993-45845464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
86-596
               

               
Cow position:
               
chr5:44848311-44847791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
235, 71
               

               
Conread position:
               
87-526
               

               
Cow position:
               
chr5:4710440-4709985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
88-503
               

               
Cow position:
               
chr5:56467406-56467832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
90-398
               

               
Cow position:
               
chr5:75829027-75828728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
93-385
               

               
Cow position:
               
chr5:59443544-59443256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 97
               

               
Conread position:
               
94-380
               

               
Cow position:
               
chr5:62107787-62107497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 101
               

               
Conread position:
               
96-569
               

               
Cow position:
               
chr5:35826303-35826807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
101-591
               

               
Cow position:
               
chr5:21617170-21617686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
105-490
               

               
Cow position:
               
chr5:21963998-21964399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
106-389
               

               
Cow position:
               
chr5:26990112-26990394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 165
               

               
Conread position:
               
107-571
               

               
Cow position:
               
chr5:12352061-12351601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
113-385
               

               
Cow position:
               
chr5:4507234-4506953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 132
               

               
Conread position:
               
117-385
               

               
Cow position:
               
chr5:39710570-39710841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
118-585
               

               
Cow position:
               
chr5:11229937-11229446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
123-593
               

               
Cow position:
               
chr5:64139300-64139796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 397
               

               
Conread position:
               
126-390
               

               
Cow position:
               
chr5:46122606-46122347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
128-423
               

               
Cow position:
               
chr5:65924959-65924652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
129-588
               

               
Cow position:
               
chr5:19278950-19278475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
130-607
               

               
Cow position:
               
chr5:38832861-38833361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
135-384
               

               
Cow position:
               
chr5:61488362-61488110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
135-585
               

               
Cow position:
               
chr5:59326079-59325594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
141-592
               

               
Cow position:
               
chr5:5855636-5856092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
184, 109
               

               
Conread position:
               
143-311
               

               
Cow position:
               
chr5:39419026-39418862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 103
               

               
Conread position:
               
143-337
               

               
Cow position:
               
chr5:62261632-62261815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
143-377
               

               
Cow position:
               
chr5:43929977-43929747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
143-380
               

               
Cow position:
               
chr5:51999976-52000216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
143-526
               

               
Cow position:
               
chr5:57626564-57626954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
143-584
               

               
Cow position:
               
chr5:40109258-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
143-603
               

               
Cow position:
               
chr5:72310470-72310929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
143-608
               

               
Cow position:
               
chr5:55967126-55966622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 366
               

               
Conread position:
               
143-609
               

               
Cow position:
               
chr5:69337589-69338065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 29
               

               
Conread position:
               
143-615
               

               
Cow position:
               
chr5:35684691-35685187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 390
               

               
Conread position:
               
143-619
               

               
Cow position:
               
chr5:8024432-8023955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
143-642
               

               
Cow position:
               
chr5:4617134-4617622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
223, 30
               

               
Conread position:
               
144-385
               

               
Cow position:
               
chr5:32956332-32956096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
192, 62
               

               
Conread position:
               
144-577
               

               
Cow position:
               
chr5:58144848-58144387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chr5:24837181-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr5:42744556-42744774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
145-385
               

               
Cow position:
               
chr5:37714146-37713898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
145-385
               

               
Cow position:
               
chr5:73252855-73253089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr5:37814382-37814648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
145-507
               

               
Cow position:
               
chr5:33537653-33538021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
145-615
               

               
Cow position:
               
chr5:32339216-32338705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 217
               

               
Conread position:
               
146-496
               

               
Cow position:
               
chr5:66296998-66297344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
146-596
               

               
Cow position:
               
chr5:25035467-25035018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
147-381
               

               
Cow position:
               
chr5:56433562-56433799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
147-584
               

               
Cow position:
               
chr5:64176360-64175906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 371
               

               
Conread position:
               
147-619
               

               
Cow position:
               
chr5:30844873-30845362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
149-374
               

               
Cow position:
               
chr5:60126136-60126359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
149-591
               

               
Cow position:
               
chr5:20127817-20128286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
150-381
               

               
Cow position:
               
chr5:65588476-65588696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
187, 30
               

               
Conread position:
               
151-586
               

               
Cow position:
               
chr5:25495573-25495125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
151-606
               

               
Cow position:
               
chr5:41164853-41165328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
152-517
               

               
Cow position:
               
chr5:28324111-28324491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 311
               

               
Conread position:
               
153-321
               

               
Cow position:
               
chr5:1460658-1460490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
153-379
               

               
Cow position:
               
chr5:17063327-17063097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
153-382
               

               
Cow position:
               
chr5:45036787-45037017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
153-404
               

               
Cow position:
               
chr5:29353362-29353117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
153-511
               

               
Cow position:
               
chr5:6683581-6683218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
153-601
               

               
Cow position:
               
chr5:24996457-24995979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
154-614
               

               
Cow position:
               
chr5:3627400-3626929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 276
               

               
Conread position:
               
155-376
               

               
Cow position:
               
chr5:64137020-64137244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
155-534
               

               
Cow position:
               
chr5:12709655-12710043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
155-588
               

               
Cow position:
               
chr5:40388097-40387673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
156-362
               

               
Cow position:
               
chr5:27353466-27353258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
156-381
               

               
Cow position:
               
chr5:22243015-22242780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
156-584
               

               
Cow position:
               
chr5:30253515-30253964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
159-383
               

               
Cow position:
               
chr5:56820487-56820265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
159-598
               

               
Cow position:
               
chr5:72895465-72895924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
160-591
               

               
Cow position:
               
chr5:26262896-26262454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
221, 12
               

               
Conread position:
               
165-605
               

               
Cow position:
               
chr5:56028751-56028301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 180
               

               
Conread position:
               
169-377
               

               
Cow position:
               
chr5:63185469-63185265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
169-607
               

               
Cow position:
               
chr5:4280248-4280693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
203, 93
               

               
Conread position:
               
173-570
               

               
Cow position:
               
chr5:15722265-15721878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
165, 15
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr5:5848395-5848205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
176-385
               

               
Cow position:
               
chr5:40039979-40039771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
160, 94
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr5:35235917-35235701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
176-426
               

               
Cow position:
               
chr5:29212740-29212984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
160, 69
               

               
Conread position:
               
176-469
               

               
Cow position:
               
chr5:57271473-57271187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
176-493
               

               
Cow position:
               
chr5:45803852-45804193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
162, 66
               

               
Conread position:
               
176-597
               

               
Cow position:
               
chr5:35969334-35969777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 76
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:57736908-57737229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
206, 66
               

               
Conread position:
               
180-377
               

               
Cow position:
               
chr5:35449049-35449239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
191, 72
               

               
Conread position:
               
180-588
               

               
Cow position:
               
chr5:50943359-50942932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 337
               

               
Conread position:
               
181-383
               

               
Cow position:
               
chr5:23169022-23168832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
186-385
               

               
Cow position:
               
chr5:75230485-75230677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr5:34561814-34562011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr5:57575571-57575767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
190-606
               

               
Cow position:
               
chr5:44447081-44446629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 244
               

               
Conread position:
               
193-496
               

               
Cow position:
               
chr5:6286618-6286297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
194-375
               

               
Cow position:
               
chr5:69461144-69461319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
195-501
               

               
Cow position:
               
chr5:48010036-48009717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
148, 57
               

               
Conread position:
               
196-586
               

               
Cow position:
               
chr5:7044899-7044480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 222
               

               
Conread position:
               
198-584
               

               
Cow position:
               
chr5:29061111-29060715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
200-537
               

               
Cow position:
               
chr5:61810608-61810950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
205-580
               

               
Cow position:
               
chr5:65136104-65136477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
206-351
               

               
Cow position:
               
chr5:57576035-57576181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
206-606
               

               
Cow position:
               
chr5:46512945-46512523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 260
               

               
Conread position:
               
206-607
               

               
Cow position:
               
chr5:3668719-3669106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 133
               

               
Conread position:
               
206-613
               

               
Cow position:
               
chr5:44028480-44028058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
209-382
               

               
Cow position:
               
chr5:69520715-69520886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
216-608
               

               
Cow position:
               
chr5:56014566-56014970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
118, 46
               

               
Conread position:
               
216-615
               

               
Cow position:
               
chr5:41010165-41009752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 125
               

               
Conread position:
               
219-382
               

               
Cow position:
               
chr5:30950085-30949921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
117, 132
               

               
Conread position:
               
219-577
               

               
Cow position:
               
chr5:74580627-74581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 109
               

               
Conread position:
               
221-376
               

               
Cow position:
               
chr5:54060110-54060266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
224-508
               

               
Cow position:
               
chr5:46426016-46425707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
228-599
               

               
Cow position:
               
chr5:42050391-42050782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 290
               

               
Conread position:
               
229-571
               

               
Cow position:
               
chr5:12673620-12673269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
233-607
               

               
Cow position:
               
chr5:54750680-54751058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
234-516
               

               
Cow position:
               
chr5:56877333-56877633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
234-574
               

               
Cow position:
               
chr5:45397423-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 239
               

               
Conread position:
               
234-608
               

               
Cow position:
               
chr5:61049205-61049582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 125
               

               
Conread position:
               
237-524
               

               
Cow position:
               
chr5:20422330-20422027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
238-603
               

               
Cow position:
               
chr5:72951689-72952066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
240-380
               

               
Cow position:
               
chr5:63865647-63865789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
244-587
               

               
Cow position:
               
chr5:30629302-30628926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
244-589
               

               
Cow position:
               
chr5:70952020-70951663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 212
               

               
Conread position:
               
244-602
               

               
Cow position:
               
chr5:42703668-42704002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
247-607
               

               
Cow position:
               
chr5:64027149-64026760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr5:7755702-7755405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 242
               

               
Conread position:
               
249-423
               

               
Cow position:
               
chr5:38647219-38647392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
251-385
               

               
Cow position:
               
chr5:7921537-7921401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
254-590
               

               
Cow position:
               
chr5:3549918-3549575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
254-603
               

               
Cow position:
               
chr5:991332-991715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 288
               

               
Conread position:
               
254-611
               

               
Cow position:
               
chr5:18288995-18289366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 262
               

               
Conread position:
               
255-599
               

               
Cow position:
               
chr5:22666960-22667311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
258-526
               

               
Cow position:
               
chr5:44726456-44726168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
270-393
               

               
Cow position:
               
chr5:49440990-49440865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
273-492
               

               
Cow position:
               
chr5:27172095-27171861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
275-579
               

               
Cow position:
               
chr5:60599298-60598968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
276-597
               

               
Cow position:
               
chr5:60016055-60016401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 246
               

               
Conread position:
               
277-598
               

               
Cow position:
               
chr5:29895087-29895409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
278-570
               

               
Cow position:
               
chr5:60183691-60184008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
58, 249
               

               
Conread position:
               
279-584
               

               
Cow position:
               
chr5:14921039-14920702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
289-586
               

               
Cow position:
               
chr5:56548479-56548792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 185
               

               
Conread position:
               
290-536
               

               
Cow position:
               
chr5:62378693-62378956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 246
               

               
Conread position:
               
296-575
               

               
Cow position:
               
chr5:17555120-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
301-582
               

               
Cow position:
               
chr5:41884849-41885136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 176
               

               
Conread position:
               
309-512
               

               
Cow position:
               
chr5:69636156-69636377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
309-598
               

               
Cow position:
               
chr5:61914491-61914809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
361-610
               

               
Cow position:
               
chr5:57447673-57447415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
369-601
               

               
Cow position:
               
chr5:46710586-46710824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
369-601
               

               
Cow position:
               
chr5:46715486-46715724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
369-602
               

               
Cow position:
               
chr5:36039002-36038763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 137
               

               
Conread position:
               
370-589
               

               
Cow position:
               
chr5:46541054-46540831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
370-591
               

               
Cow position:
               
chr5:69383256-69383482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
370-599
               

               
Cow position:
               
chr5:17104855-17105084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
370-603
               

               
Cow position:
               
chr5:59626970-59626728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
370-612
               

               
Cow position:
               
chr5:30302897-30303135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 129
               

               
Conread position:
               
371-606
               

               
Cow position:
               
chr5:26549140-26548896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
7, 134
               

               
Conread position:
               
373-588
               

               
Cow position:
               
chr5:51298706-51298487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
374-571
               

               
Cow position:
               
chr5:72006483-72006286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
379-588
               

               
Cow position:
               
chr5:53835728-53835949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
379-599
               

               
Cow position:
               
chr5:40241757-40241973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
380-557
               

               
Cow position:
               
chr5:56334496-56334326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
380-564
               

               
Cow position:
               
chr5:38168906-38169094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
380-585
               

               
Cow position:
               
chr5:20288251-20288033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
380-585
               

               
Cow position:
               
chr5:73253423-73253630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
380-586
               

               
Cow position:
               
chr5:34347716-34347507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
380-586
               

               
Cow position:
               
chr5:43402917-43403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
380-588
               

               
Cow position:
               
chr5:70270879-70271095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
380-591
               

               
Cow position:
               
chr5:22795229-22795437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
380-593
               

               
Cow position:
               
chr5:65941238-65941016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
380-598
               

               
Cow position:
               
chr5:34562028-34562248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
380-599
               

               
Cow position:
               
chr5:56070871-56071095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
380-604
               

               
Cow position:
               
chr5:34915041-34914811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
380-607
               

               
Cow position:
               
chr5:74039991-74039758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
380-608
               

               
Cow position:
               
chr5:57686725-57686499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 123
               

               
Conread position:
               
380-608
               

               
Cow position:
               
chr5:65752872-65753108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
380-612
               

               
Cow position:
               
chr5:49342037-49341782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 244
               

               
Conread position:
               
381-580
               

               
Cow position:
               
chr5:63234811-63234602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
381-598
               

               
Cow position:
               
chr5:30232921-30233148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
381-604
               

               
Cow position:
               
chr5:19752320-19752545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 115
               

               
Conread position:
               
381-606
               

               
Cow position:
               
chr5:68537652-68537420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 219
               

               
Conread position:
               
381-607
               

               
Cow position:
               
chr5:57074318-57074090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
381-607
               

               
Cow position:
               
chr5:63627513-63627295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
381-607
               

               
Cow position:
               
chr5:65679957-65679732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
381-639
               

               
Cow position:
               
chr5:2240976-2240710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
382-599
               

               
Cow position:
               
chr5:12434557-12434774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
383-598
               

               
Cow position:
               
chr5:56525691-56525472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
385-527
               

               
Cow position:
               
chr5:61875559-61875702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
387-620
               

               
Cow position:
               
chr5:61455867-61456107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 134
               

               
Conread position:
               
388-579
               

               
Cow position:
               
chr5:66551877-66551673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
388-580
               

               
Cow position:
               
chr5:66466339-66466533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
388-591
               

               
Cow position:
               
chr5:29460230-29460433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
388-604
               

               
Cow position:
               
chr5:45187097-45186873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
388-629
               

               
Cow position:
               
chr5:50824612-50824854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
389-591
               

               
Cow position:
               
chr5:9894102-9893894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
389-611
               

               
Cow position:
               
chr5:33273716-33273946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 204
               

               
Conread position:
               
389-614
               

               
Cow position:
               
chr5:26167442-26167673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
392-588
               

               
Cow position:
               
chr5:75760250-75760040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
392-603
               

               
Cow position:
               
chr5:51289567-51289358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
393-582
               

               
Cow position:
               
chr5:60523760-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
394-598
               

               
Cow position:
               
chr5:49207297-49207093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
394-603
               

               
Cow position:
               
chr5:34288224-34288011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
397-536
               

               
Cow position:
               
chr5:17602175-17602032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
399-627
               

               
Cow position:
               
chr5:51053610-51053380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
402-600
               

               
Cow position:
               
chr5:28660273-28660470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
402-606
               

               
Cow position:
               
chr5:6245621-6245418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 93
               

               
Conread position:
               
403-574
               

               
Cow position:
               
chr5:56753976-56754146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
405-591
               

               
Cow position:
               
chr5:58401613-58401796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
405-608
               

               
Cow position:
               
chr5:65760492-65760282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
407-558
               

               
Cow position:
               
chr5:49501778-49501623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
407-584
               

               
Cow position:
               
chr5:22608688-22608863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
407-586
               

               
Cow position:
               
chr5:74887854-74887673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
407-587
               

               
Cow position:
               
chr5:60948179-60948359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 100
               

               
Conread position:
               
407-588
               

               
Cow position:
               
chr5:52165131-52164945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
407-588
               

               
Cow position:
               
chr5:54312647-54312827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
407-591
               

               
Cow position:
               
chr5:57302811-57303004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
407-598
               

               
Cow position:
               
chr5:43858373-43858180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
407-598
               

               
Cow position:
               
chr5:57755986-57755795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
407-599
               

               
Cow position:
               
chr5:16668743-16668927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
407-601
               

               
Cow position:
               
chr5:2827420-2827617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
407-601
               

               
Cow position:
               
chr5:22102604-22102794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-603
               

               
Cow position:
               
chr5:42064251-42064450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
407-604
               

               
Cow position:
               
chr5:7012804-7012605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
407-604
               

               
Cow position:
               
chr5:54127336-54127531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
407-606
               

               
Cow position:
               
chr5:59384643-59384441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr5:11668139-11667937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr5:14550538-14550335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr5:47220534-47220740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr5:52853017-52853216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
407-607
               

               
Cow position:
               
chr5:62811870-62812074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
407-614
               

               
Cow position:
               
chr5:6876922-6876709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
407-614
               

               
Cow position:
               
chr5:49821474-49821687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
407-623
               

               
Cow position:
               
chr5:17828433-17828214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
407-632
               

               
Cow position:
               
chr5:20995040-20994811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
408-582
               

               
Cow position:
               
chr5:66286992-66287163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
408-610
               

               
Cow position:
               
chr5:21339223-21339011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 204
               

               
Conread position:
               
410-582
               

               
Cow position:
               
chr5:9352560-9352723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
410-587
               

               
Cow position:
               
chr5:36143033-36143205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
410-588
               

               
Cow position:
               
chr5:69765983-69765806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
410-596
               

               
Cow position:
               
chr5:43611747-43611935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
410-601
               

               
Cow position:
               
chr5:6438977-6438786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
410-606
               

               
Cow position:
               
chr5:54340815-54341011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
410-606
               

               
Cow position:
               
chr5:59511422-59511234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
182, 83
               

               
Conread position:
               
413-594
               

               
Cow position:
               
chr5:51247079-51246904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
413-599
               

               
Cow position:
               
chr5:14904016-14903827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
413-606
               

               
Cow position:
               
chr5:60100522-60100710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
413-606
               

               
Cow position:
               
chr5:60153827-60154015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr5:52108216-52108001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
414-569
               

               
Cow position:
               
chr5:16939541-16939383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
414-581
               

               
Cow position:
               
chr5:44734672-44734506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
414-583
               

               
Cow position:
               
chr5:18062266-18062087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
414-587
               

               
Cow position:
               
chr5:14454094-14454271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
414-595
               

               
Cow position:
               
chr5:66972482-66972665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
414-598
               

               
Cow position:
               
chr5:46681666-46681485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
414-599
               

               
Cow position:
               
chr5:17566386-17566202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
414-600
               

               
Cow position:
               
chr5:30561985-30562168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
414-602
               

               
Cow position:
               
chr5:19972754-19972565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
414-603
               

               
Cow position:
               
chr5:22242713-22242532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
414-605
               

               
Cow position:
               
chr5:61580334-61580526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
414-606
               

               
Cow position:
               
chr5:49919977-49920171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
414-607
               

               
Cow position:
               
chr5:7177204-7177399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
414-607
               

               
Cow position:
               
chr5:48062064-48061861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
414-608
               

               
Cow position:
               
chr5:11427180-11426986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
414-608
               

               
Cow position:
               
chr5:43604193-43604387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
414-609
               

               
Cow position:
               
chr5:2355573-2355767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
414-609
               

               
Cow position:
               
chr5:67950733-67950536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
414-610
               

               
Cow position:
               
chr5:55783908-55783713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
414-613
               

               
Cow position:
               
chr5:49358625-49358436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
415-585
               

               
Cow position:
               
chr5:37842225-37842054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
415-594
               

               
Cow position:
               
chr5:40531484-40531297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
415-597
               

               
Cow position:
               
chr5:57087009-57086824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
415-598
               

               
Cow position:
               
chr5:12901971-12902157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
415-601
               

               
Cow position:
               
chr5:57101469-57101286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
415-607
               

               
Cow position:
               
chr5:60514974-60514779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
415-615
               

               
Cow position:
               
chr5:39815447-39815247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
415-625
               

               
Cow position:
               
chr5:742784-742995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
416-585
               

               
Cow position:
               
chr5:38420656-38420833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
416-586
               

               
Cow position:
               
chr5:52192374-52192212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-588
               

               
Cow position:
               
chr5:6086287-6086113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
416-588
               

               
Cow position:
               
chr5:17086965-17086789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
416-591
               

               
Cow position:
               
chr5:57556084-57556260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
416-597
               

               
Cow position:
               
chr5:39035835-39036019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
416-598
               

               
Cow position:
               
chr5:26147646-26147825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
416-600
               

               
Cow position:
               
chr5:8736224-8736037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
416-601
               

               
Cow position:
               
chr5:37253484-37253664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
416-603
               

               
Cow position:
               
chr5:62011738-62011924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
416-606
               

               
Cow position:
               
chr5:60207763-60207950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
416-607
               

               
Cow position:
               
chr5:46421641-46421844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 192
               

               
Conread position:
               
416-607
               

               
Cow position:
               
chr5:60596076-60595866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
416-608
               

               
Cow position:
               
chr5:35394378-35394191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-608
               

               
Cow position:
               
chr5:63241032-63241228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
416-609
               

               
Cow position:
               
chr5:1694033-1693845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-609
               

               
Cow position:
               
chr5:3817632-3817435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-610
               

               
Cow position:
               
chr5:35190165-35190356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-612
               

               
Cow position:
               
chr5:29599491-29599300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
416-615
               

               
Cow position:
               
chr5:39937170-39937372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
416-615
               

               
Cow position:
               
chr5:43839944-43839743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
416-624
               

               
Cow position:
               
chr5:34918401-34918604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
416-627
               

               
Cow position:
               
chr5:15991584-15991376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
417-574
               

               
Cow position:
               
chr5:50087822-50087982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
417-583
               

               
Cow position:
               
chr5:36822939-36823092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
417-588
               

               
Cow position:
               
chr5:34787630-34787800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
417-596
               

               
Cow position:
               
chr5:12557231-12557051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
417-638
               

               
Cow position:
               
chr5:21721414-21721197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
418-541
               

               
Cow position:
               
chr5:60126747-60126874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
419-588
               

               
Cow position:
               
chr5:3677778-3677956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
420-595
               

               
Cow position:
               
chr5:4824207-4824389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr5:4981510-4981660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
421-581
               

               
Cow position:
               
chr5:5017434-5017592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
421-586
               

               
Cow position:
               
chr5:46479181-46479021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
421-597
               

               
Cow position:
               
chr5:27550890-27550724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
422-582
               

               
Cow position:
               
chr5:694922-695076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 124
               

               
Conread position:
               
422-601
               

               
Cow position:
               
chr5:67339944-67340122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 74
               

               
Conread position:
               
422-602
               

               
Cow position:
               
chr5:5030504-5030679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
422-602
               

               
Cow position:
               
chr5:25597893-25598067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
422-603
               

               
Cow position:
               
chr5:25462150-25462328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 74
               

               
Conread position:
               
422-613
               

               
Cow position:
               
chr5:71579521-71579710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
423-585
               

               
Cow position:
               
chr5:55756356-55756188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 74
               

               
Conread position:
               
423-585
               

               
Cow position:
               
chr5:70591616-70591767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
423-592
               

               
Cow position:
               
chr5:31648482-31648647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
136, 51
               

               
Conread position:
               
423-594
               

               
Cow position:
               
chr5:5016487-5016657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
423-599
               

               
Cow position:
               
chr5:55942317-55942141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
423-602
               

               
Cow position:
               
chr5:19968297-19968116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
423-603
               

               
Cow position:
               
chr5:35247048-35246863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
423-603
               

               
Cow position:
               
chr5:47335091-47335265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
423-606
               

               
Cow position:
               
chr5:15770393-15770207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 174
               

               
Conread position:
               
423-606
               

               
Cow position:
               
chr5:62996020-62996204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
133, 70
               

               
Conread position:
               
423-648
               

               
Cow position:
               
chr5:29010318-29010539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
425-597
               

               
Cow position:
               
chr5:22957474-22957639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
426-606
               

               
Cow position:
               
chr5:59662992-59662810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
130, 71
               

               
Conread position:
               
426-606
               

               
Cow position:
               
chr5:64843905-64843719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
426-607
               

               
Cow position:
               
chr5:32975824-32976011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
426-616
               

               
Cow position:
               
chr5:52211621-52211436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
130, 67
               

               
Conread position:
               
426-625
               

               
Cow position:
               
chr5:53175192-53174981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
427-603
               

               
Cow position:
               
chr5:47960194-47960021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
428-599
               

               
Cow position:
               
chr5:57497356-57497187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
428-607
               

               
Cow position:
               
chr5:60962974-60963144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
175, 64
               

               
Conread position:
               
428-607
               

               
Cow position:
               
chr5:63300146-63300326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
430-583
               

               
Cow position:
               
chr5:19561378-19561223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
430-586
               

               
Cow position:
               
chr5:30492724-30492565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
430-586
               

               
Cow position:
               
chr5:59335840-59335999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
430-592
               

               
Cow position:
               
chr5:7057331-7057165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
430-598
               

               
Cow position:
               
chr5:56284373-56284545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
430-603
               

               
Cow position:
               
chr5:50101304-50101133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
130, 44
               

               
Conread position:
               
430-604
               

               
Cow position:
               
chr5:16185448-16185623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
127, 77
               

               
Conread position:
               
430-604
               

               
Cow position:
               
chr5:56643137-56643310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
430-607
               

               
Cow position:
               
chr5:24108990-24108811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
59, 51
               

               
Conread position:
               
430-608
               

               
Cow position:
               
chr5:55965824-55965643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
430-612
               

               
Cow position:
               
chr5:40122540-40122357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
430-616
               

               
Cow position:
               
chr5:38079440-38079628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
430-617
               

               
Cow position:
               
chr5:57399183-57398995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
430-623
               

               
Cow position:
               
chr5:36634776-36634974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
430-630
               

               
Cow position:
               
chr5:57062459-57062257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
430-632
               

               
Cow position:
               
chr5:30132794-30132600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
430-633
               

               
Cow position:
               
chr5:57640945-57641156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
431-574
               

               
Cow position:
               
chr5:53980683-53980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
432-601
               

               
Cow position:
               
chr5:12562683-12562520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
126, 42
               

               
Conread position:
               
432-607
               

               
Cow position:
               
chr5:65140371-65140546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
432-616
               

               
Cow position:
               
chr5:49183222-49183397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
160, 64
               

               
Conread position:
               
432-628
               

               
Cow position:
               
chr5:52849157-52849349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
433-591
               

               
Cow position:
               
chr5:64061092-64061244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
433-603
               

               
Cow position:
               
chr5:19626651-19626818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
433-614
               

               
Cow position:
               
chr5:53779228-53779410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
434-602
               

               
Cow position:
               
chr5:58487449-58487615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
434-606
               

               
Cow position:
               
chr5:35235615-35235440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
435-580
               

               
Cow position:
               
chr5:64142580-64142434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
435-607
               

               
Cow position:
               
chr5:52001548-52001375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
160, 73
               

               
Conread position:
               
437-588
               

               
Cow position:
               
chr5:45854574-45854729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
437-591
               

               
Cow position:
               
chr5:34639199-34639355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
437-598
               

               
Cow position:
               
chr5:17537596-17537441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
437-606
               

               
Cow position:
               
chr5:69461413-69461580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
437-619
               

               
Cow position:
               
chr5:56624440-56624255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 172
               

               
Conread position:
               
440-619
               

               
Cow position:
               
chr5:41628585-41628416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
442-606
               

               
Cow position:
               
chr5:4728156-4728315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
443-600
               

               
Cow position:
               
chr5:48104344-48104500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
443-608
               

               
Cow position:
               
chr5:18578975-18579138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
443-608
               

               
Cow position:
               
chr5:21520358-21520199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
446-603
               

               
Cow position:
               
chr5:74049910-74050067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
446-610
               

               
Cow position:
               
chr5:14000731-14000889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
446-615
               

               
Cow position:
               
chr5:58847-58675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
451-603
               

               
Cow position:
               
chr5:25446976-25447130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
452-605
               

               
Cow position:
               
chr5:43982408-43982565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 42
               

               
Conread position:
               
453-595
               

               
Cow position:
               
chr5:43408247-43408105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
459-587
               

               
Cow position:
               
chr5:7025675-7025542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
464-615
               

               
Cow position:
               
chr5:74690150-74689997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
469-608
               

               
Cow position:
               
chr5:63940339-63940205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
470-589
               

               
Cow position:
               
chr5:8149196-8149080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
484-615
               

               
Cow position:
               
chr5:70948223-70948090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
490-603
               

               
Cow position:
               
chr5:9859251-9859134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               
Show alignments to all cow chromosomes.